Mp3g04170



Description

Annotation

Database ID Description
PANTHER PTHR12433 MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 25
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF11265 Mediator complex subunit 25 von Willebrand factor type A
KEGG K15168 mediator of RNA polymerase II transcription subunit 25
KOG KOG1985 Vesicle coat complex COPII, subunit SEC24/subunit SFB2; C-term missing; [U]
MapolyID Mapoly0022s0114 -
GO GO:0005667 transcription regulator complex
GO GO:0016592 mediator complex
GO GO:0045944 positive regulation of transcription by RNA polymerase II

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Mediator subunit MED25 (Mapoly0022s0114); MYC coactivator.

0 core 1 peripheral

Peñuelas, M., et al. (2019) · Plant Cell  research experimental comparator
Mediator subunit MED25 (Mapoly0022s0114); MYC coactivator.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g04170.1 chr3:4484989..4493724 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g04170.2 chr3:4484989..4493724 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g04170 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g04170 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.