Mp3g04880



Description

Annotation

Database ID Description
ProSiteProfiles PS50084 Type-1 KH domain profile.
CDD cd22460 KH-I_PEPPER_rpt2_like
Gene3D G3DSA:3.30.1370.10 K Homology domain, type 1
Pfam PF00013 KH domain
SUPERFAMILY SSF54791 Eukaryotic type KH-domain (KH-domain type I)
CDD cd22459 KH-I_PEPPER_rpt1_like
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.30.310.210 -
PANTHER PTHR10288 KH DOMAIN CONTAINING RNA BINDING PROTEIN
SMART SM00322 kh_6
CDD cd22462 KH-I_HEN4_like_rpt5
KEGG K21444 poly(rC)-binding protein 3/4
KOG KOG2190 PolyC-binding proteins alphaCP-1 and related KH domain proteins; [AR]
KOG KOG2191 RNA-binding protein NOVA1/PASILLA and related KH domain proteins; C-term missing; [AR]
MapolyID Mapoly0022s0041 -
GO GO:0003723 RNA binding
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpHOS5 RNA-binding KH domain-containing protein Published

Transcript models

Transcript ID Location Sequences Extract region
Mp3g04880.1 chr3:5168026..5179273 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g04880.2 chr3:5168026..5179273 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g04880 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g04880 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.