Mp3g05000



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00526 h15plus2
Gene3D G3DSA:1.10.10.60 -
Gene3D G3DSA:1.10.10.10 -
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
PANTHER PTHR46267 SINGLE MYB HISTONE 4
Pfam PF00538 linker histone H1 and H5 family
ProSiteProfiles PS51504 Linker histone H1/H5 globular (H15) domain profile.
FunFam G3DSA:1.10.10.60:FF:000168 Telomere repeat-binding factor 1
SUPERFAMILY SSF46689 Homeodomain-like
SUPERFAMILY SSF46785 "Winged helix" DNA-binding domain
SMART SM00717 sant
Coils Coil Coil
ProSiteProfiles PS50090 Myb-like domain profile.
CDD cd00073 H15
CDD cd11660 SANT_TRF
Pfam PF00249 Myb-like DNA-binding domain
KOG KOG0048 Transcription factor, Myb superfamily; C-term missing; [K]
MapolyID Mapoly0022s0028 -
GO GO:0006334 nucleosome assembly
GO GO:0003691 double-stranded telomeric DNA binding
GO GO:0000786 nucleosome
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
Mp1R-MYB8 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

M. polymorpha 1R-MYB TF assayed by ampDAP-seq; yielded the TFBM TAGGG.

1 core 0 peripheral

Zenker S, Wulf D, Meierhenrich A, Viehoever P, Becker S, Eisenhut M, Stracke R, Weisshaar B, Brautigam A. (2025) · Plant Physiology  research experimental subject
M. polymorpha 1R-MYB TF assayed by ampDAP-seq; yielded the TFBM TAGGG.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g05000.1 chr3:5309186..5316364 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g05000 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g05000 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.