Mp3g06080
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat |
| SMART | SM00320 | WD40_4 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. |
| FunFam | G3DSA:2.130.10.10:FF:000268 | polycomb group protein FIE1 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. |
| SUPERFAMILY | SSF50978 | WD40 repeat-like |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature |
| PANTHER | PTHR10253 | POLYCOMB PROTEIN |
| Gene3D | G3DSA:2.130.10.10 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. |
| KEGG | K11462 | polycomb protein EED |
| KOG | KOG1034 | Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily; [K] |
| MapolyID | Mapoly0006s0078 | - |
| GO | GO:0035098 | ESC/E(Z) complex |
| GO | GO:0031491 | nucleosome binding |
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO | GO:0005515 | protein binding |
| GO | GO:0006342 | heterochromatin formation |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpFIE | CHROMATIN | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
CHROMATIN (from nomenclature)
0 core 1 peripheral
Montgomery, S. A., et al. (2022)
· eLife research experimental background
Non-catalytic PRC2 subunit; expression profiling only, expressed across developmental stages, supporting a functional Polycomb complex in Marchantia.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g06080 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g06080.1 TGGAATGGAT GGGAGACAAT CGCGCAATAT TCTAGTTTGT TCTGCGATGT GCTGGAAGAG GATGTGAACA AACTCCCGGG CTCTACGAGG ATTGGTTTGT TGTTACTGTA ACATCGCCTC AAAATTATTC GAAAGTTTGA ATTTGCCAGC GTAGCAGCGG ATCAAACATT TGAATCGGCC GAAATCGAGG ATCGGCATCA GCATCGGAAA GGTAGCGAAG AAAATGAGAG AAGATTTCCG AAGAATTTCA GCGATCGCTG TCCGCGAGGT GGTCGGAGGA TGAGCATGTC GCAGAAAGAT TAGAGTGAAT GTTCATCGAT TGTCTGAAGT GGCCTTGGCT AGGAAGGGCC CCGTGAAACT ACTGATTTCT TTCATCTGGT GCGCTAATGG CGGGGAAATC GGTACCTTTC GGAAATGAGC CGGTAGAAGG TGTAGTAACG ATCTTGAAAA AGAAGCGAGA CTACAAAGTT TGCAATCGTA TGGCAGAAGG CAAACGACCA CTATATGCCA TCACCTTCAA TTTTCTGGAC TCGCGTTTCT TCAGCTTGTT TGCCACTGCT GGCGGCAATC GGGTAAAGTC TAAGTCTCTC TCTGTCTGGA AGGAACACTA ATACACTACC CAGAGCGATA TATATCAACA TCTAATATAG TGGCTTAGTT CAGTCAGCTT GGTTCTTCAT CAAAACACTT TCACCTTTTT TGTTTTCTGC TGGAGATCTT CAGTGTGCAT ATTTAGAGTT CTGTCACCCT TTTCCTAAAA ATTGCATCAG TATCTATCAA TGTTCCTCCA TCCGCGACAT GACAATACTC TTGAAGTATG TCGATGACAT CAGCTTTTGC CCGTAAATTT TCCTCCTTTA TGATGAAAAC GTTTCATGAA TTTGGAAACT TTGCAATCCT GATCAATTTC TGCTCCCTCC AATTTGAGAC AGGTTCCTGT ATACTCCGGT ATGAAGTTAT TGTTAAGAGT AATCATATTC AGTTTTGGGA TGTTCAGGAC TGAGAGGCAT AAGAGTTTTC TTCTCGTGCA ATTATCCGCA GACAATAGAT CCTTATAGCT TTCACAGGGG TTTTATCTAA AACATTTCAT TTTCATTGAC GGTTGTTTAC TGCTACAGGT GACTGTGTAC GATTGCCTAG AAGGAGGGGC GATTGGGATC CTTCAGGCTT ATGTCGACGA AGATGTAAGA TTTTTTACTA AGAATTTTAT TCACAATTTA TTAAGACTCC GCTGCCACAG ATCTTGTTGG AACCGACTGA AAGGAATTTT CTTGCTCACT AGCTACTAGT TTTCTGCTTA CTTGTGCTTG GTTTTGGTTT CGAAAATTCC TTCCACTAAT TCAATCTTCA CTGACTCATA TAGATGAATT TGTTGTGCAG AAAGACGAAT CATTCTACAC TGTCTGCTGG GCATCTGACA ACGCAGGGAC TCCTTTGTTG GTCGCTAGTG GGAGCAATGG CGTCATTAGA ATTATTGACT GTAGCACAGA GAATCTATTG AGGGTTTGTG GACATAACGA ACATCTCAAA GTTATCAAAT AGCCTGAAGT TCCTCTTGAC CACTTGAACC TCTTTATTAT TCTCAAGATA TGGAAACATA CAACCTGGTG ACTTTCTATT CTGCCTAAGT TTGCCGTTGA TTCTGTTGAT TGGCAGAGTC TTTTGGGGCA TGGCGATTCT GTGAATGAAC TTCGAACACA GTCCATGAAG CCTAGCCTTG TAGTATCGGC AAGCAAGGTG AGAAATTACT AAGAAAGTCA AGGCCTGACC ATAAATTCTT ACATTGCCAG TGATGCAACT CCATACTGAT GAACTTCATA TCTTGTATAT CCAGGATGAA TCATTACGAC TCTGGAATGT TACCACCAAT GTGTGTATCC TCATACTGGC TGGTGCCGGA GGTCATCGTA ACGAGGTCCT CAGTGTGGTA CGCTCTATTT GAATTTTGCA CTTACTTTCC AGCCTGCATT GATAGCTTTG TAAAATTCTC AAGTGTAACA GTCCATAAAG GGAACAGCTA TGAGTGTATG AGTGCTGTTT TGGCCCTCCT ACTTGCCGAA AGCTTTAAAG GACTGGCAGC TGTTATACGT CTGTTGTGTT TCTCGTAGGA TTTTCATCCA TCTGATGTGA ATCAAATCGC GAGCTGCGGG ATGGACAATA CCATCAAAAT TTGGAACATT AAAGGTATCA ATTAGTAAAT CTCTAATTAA AGACTATTTA CCATTTGCCT GCCAAATCAT TTCTGCATGC AATACCAAGA GTGTATTTGC TAGCTATTCT CTGGCTTTCT GTATCTCTCG TTGATGGAGA TCCCTGAAGA ACTATGTATG CATATGTCTG GATGTATCAG ATTTTTGGGT GTATGTTGAG AAGTCATTCT CGTGGACCGA CTCACCATCA ACGTTTCCCA CTAAATATGT GCAATTTCCT GTAAGTTCAA CTTCATCCTT TTTGTCTTGC CTCGAGGAAA GTTTCATCGA AAACGAAGTG CACACAGAAT ATATTGGACT TTGTGATGAA CTTTCTTATT ATGTTTATTT CACTTTAAGT TTATAAAGTA GAAATTTTGG TAACTTCATT TACAACAAGC GCATCTAGGA AGGTGTAATG AGTTTACATA TAGATCAGTC GAGCAGCCCC CCATTTTAAT AGCTAAAGTA TCGTTTGACA GGTCTTCAAT GCTTTGGTTC ACTCTAACTA TGTGGACTGC ACCCGCTGGC TGGGGGATTT CATCCTTTCG AAGGTATGTC TTTGCTTTTG CTGATATTAG CAAATATTCT GTCAATATTT GTTTGACAAA GATCTTTTTA AGAAGAGACC AGTGGGTACA GATGAGGTCA GGTTTTACTT AAGATGAAGC TGGAGTAACA TTTCGTGTAG GGATCTGAAA GCAGCTACCA CAGGTGGTCT AAACCCATTG TGATGTACCG GTGTAATCTG CAGGGTATGT TGACACGAAT GATCTACAAT AAGTCCTAAG TAACCAGAAA ATGTAGAAAA CGACTCAAGT ACAGGTGGTT CAAAACATCG CAATATCAAT TCTTATATTT TACCTCTTTC CTTAAGTAGT GCTCTTAACA TGTGCAGAGT GTTGACAATG AGATCGTTTT GTGGGAGCCT ATGTTCAAAG AACACGGAAC AGAGGTAAGA TTGCGGTCAG ATGCGAAGTG TGTATAATGC TCTATTCAGG AGGCGTGACT GTCTTGAAGT TTTCATCTCG TGTCAGTGGA CAATCTTTTA TGACACATTT CTATTGTTGT AGGGAGTCGT GGACATACTT CAAAAGTATC CTGTTCCCGA ATGCGACATC TGGTTTATCA AGTTCTCCTG CGATTTTTCT TTCAACACCC TCGCCATAGG TGACTTAACG TCATCCTTTA TCTTGCTTGT GCAACAGAGT TGATGTAGAT ATTTTCAGTT AAACTGCTAC GAGCTGCATA AGGAAAATGA TTTCCATTTG TACAGGTAAT CGAGAGGGCA AAATATATGT TTGGGAGCCA CAAGCAAGTC CCCCAAATCT GCTCGCGAAG TAAGAGGACC TCAACCTTGT TAGTTTTGCG TTCTTTCCTT CCAAGTCAGT GTTGCACAGT TGTACTTCCA GTACAAATCA GGTGTGTTCT GTACATCTTT GACCGCGCTA TCTATTTTTG ATGCAACATT TAGAGTGTGT TGATATACAG GTTGTGTGCC AGTGGTTGCA AGTCCCCAAT TCGACAGACC GCTACATCAT ATGATGGAAG GTAAGTTACA TATGCCTTCT CGTGATGTTC TTGCAAACCT TAAGAATATT AAACTGCGCG ATTGAATATA TTGCCCTCCG ACAACTTTAG TTTGAAGTCA TGACCAAGCA GGATTGTATC TGAAGTTCAT GTGGAGTATG AATTTATATC GTATGTGTTG AGAACGCAGC AACACGAATT AGCTAGCTCA TATCATATAA TTGTCTTGTA GTTACCTTAG AGTTACTTCC CTTGTAAATG AAAGTCGAAG AAGTTTGTCA TTCATAACTG CAATTTTCAA AATATGTTTA GTATTTGAAA GGAAGGCATG GACTTTTCGC TACCTTGACC GATGTCGTGT ATCTTCAGTA TCATCTTGTG CTGCTGTGAG GACGGTACAA TATGGAGGTG GGATGCTGTT GCACCTATAG GTCCAACCAA CCTGCATTAG CGAAGGTATG TACTTTCGTT CATTCATCAA AATTTACAGT TTTCTGGGTT GTTTTAAGTT AATCACGATC AACTTCTTGC AGTCAACCTA ATGCTTGTAT AAAACATAAA TGAACCCAGA TCCAGTAAGG CCGATCAGGC TAGGAAAGGT ATGTAAGCGT CAAAGTATGA GCAGAGAGTT GCCACGCAGG TAGGTGAAGA GTACTAGAGG TTCAGTTTAT CTACAAGTAG TCTTGTCCTT TGACTACTTG GTAATATCCA TCTTCTGTTA TATTCTTGTT GATGAAGGTT GACATTTCAA ACCTAAGGAA ATTTAGTAAC TTTTAGGATC CAGCTTCAAG ATGTTTATGT GAGACTCCTA AGCCGGGATC ATTAAGTGTA TAGATTAGAC GTGACCAGAA TATGATCAAC AACAGCGTTG CGCTTAGTTT CAAATTGTTC CCGCTATGTA TAGCATTTCT CTTCACGTCT GTCTGATCTC CTTATTTTAC GATTTATGGA GATTTTCTTG TGCATGAACA TTGAAGAATT GTCACCCATT ACATGTGTGA TTCTTTTCAT CACACAAGAG ATAGCGAATC TCAATTATAT CGAGAGCATC GGTGTGTGCT TATATAAGGA GCCTTCTTGA CAACACAACT TTACGATCCG TGACTAAGCT GTATCGTTGC CAAGTGGTGG TACAGATACT ACACAAAGAT CGTGTGATTG CTGTTGATCA GACTGGCATT AGATTCTGCA CTAGGAAGGC GAAAGCAACC AAAGTGTACC AGTAAATATA CATGGACATG CTTGAAATTG GAGATGGATG GAACTGTCGA TGAGCTCGAA TATCAGAGTA AAGGCAGTTA GTATCATAAG CCTTTTGAGT TTTCATTACA ATTGGCAACT TGTTTGCAGC GTGACTTGGC AGAAGCTATC CAAAGCATAG TCTCAATATT TTAGCCTCAT TTCGCCACTA TAGCTATTAT CAGTTTCCTA TACATTCAGG ACTTCCCATG GCTCCCTTGT CTTCCGGGTT GAACTATGTT TGGACTCTTT CGGCATCTCC TGTGTCTCTA AAGGGGTTTC GTGTTACAGA TACAGTGTTT CTGTACTAGT AGGATAGACT TAGGATTTTT TGAAAGACGG CTTTAGTTTT GACACAATTT CCGAGCAGAA TATGACTGAA GGTTACCCAG AGAAATAAGA TTTTGTACCT TATTTCTCGG CCAATTGTAA AATTGCAGAA AGTGATCTTT GCGAGTCCAA GTGGAAACAA AAAAGATGGG AAGACACATT AAGATGTACA AGAGTGATTA TTTGAACCTA GCCCCTAGTA TCTCCCTTCG GGGCAGGGCT CGAAGGGAGC AGGGTTCGAA TAACTAGGGG CAGGGTTCGA ATTGTTTATA AACAAAACTC CATGACATTT ATTATAGAAT TACTGCTATC AAATAATCTA GTGGGATTAG CTTTGTATAA AACTTATTTG TGTTCATTGT AGAGTATTAT GTTACCACAA TTAGAGAGGT TAACGAATGG AATTATCATC ATAACTCACT TCATTTCCAA GGGTCTAAGT ACAATTCATA TAGTGAACAA ACTGCACTGC GTATAGCATC ACTCTCGATT TTTTTACATT TCTGCACATT GGTGTTGTGA AATTTAGCCA TATCTCTTGC AAACTTTTTT CTGTTCAATG GTTTGCATCA AAAGCCAATT TCTGTTTCAT GAGTAAACAC CA |
mRNA UTR + CDS |
| >Mp3g06080.1 TGGAATGGAT GGGAGACAAT CGCGCAATAT TCTAGTTTGT TCTGCGATGT GCTGGAAGAG GATGTGAACA AACTCCCGGG CTCTACGAGG ATTGGTTTGT TGTTACTGTA ACATCGCCTC AAAATTATTC GAAAGTTTGA ATTTGCCAGC GTAGCAGCGG ATCAAACATT TGAATCGGCC GAAATCGAGG ATCGGCATCA GCATCGGAAA GGTAGCGAAG AAAATGAGAG AAGATTTCCG AAGAATTTCA GCGATCGCTG TCCGCGAGGT GGTCGGAGGA TGAGCATGTC GCAGAAAGAT TAGAGTGAAT GTTCATCGAT TGTCTGAAGT GGCCTTGGCT AGGAAGGGCC CCGTGAAACT ACTGATTTCT TTCATCTGGT GCGCTAATGG CGGGGAAATC GGTACCTTTC GGAAATGAGC CGGTAGAAGG TGTAGTAACG ATCTTGAAAA AGAAGCGAGA CTACAAAGTT TGCAATCGTA TGGCAGAAGG CAAACGACCA CTATATGCCA TCACCTTCAA TTTTCTGGAC TCGCGTTTCT TCAGCTTGTT TGCCACTGCT GGCGGCAATC GGGTGACTGT GTACGATTGC CTAGAAGGAG GGGCGATTGG GATCCTTCAG GCTTATGTCG ACGAAGATAA AGACGAATCA TTCTACACTG TCTGCTGGGC ATCTGACAAC GCAGGGACTC CTTTGTTGGT CGCTAGTGGG AGCAATGGCG TCATTAGAAT TATTGACTGT AGCACAGAGA ATCTATTGAG GAGTCTTTTG GGGCATGGCG ATTCTGTGAA TGAACTTCGA ACACAGTCCA TGAAGCCTAG CCTTGTAGTA TCGGCAAGCA AGGATGAATC ATTACGACTC TGGAATGTTA CCACCAATGT GTGTATCCTC ATACTGGCTG GTGCCGGAGG TCATCGTAAC GAGGTCCTCA GTGTGGATTT TCATCCATCT GATGTGAATC AAATCGCGAG CTGCGGGATG GACAATACCA TCAAAATTTG GAACATTAAA GATTTTTGGG TGTATGTTGA GAAGTCATTC TCGTGGACCG ACTCACCATC AACGTTTCCC ACTAAATATG TGCAATTTCC TGTCTTCAAT GCTTTGGTTC ACTCTAACTA TGTGGACTGC ACCCGCTGGC TGGGGGATTT CATCCTTTCG AAGAGTGTTG ACAATGAGAT CGTTTTGTGG GAGCCTATGT TCAAAGAACA CGGAACAGAG GGAGTCGTGG ACATACTTCA AAAGTATCCT GTTCCCGAAT GCGACATCTG GTTTATCAAG TTCTCCTGCG ATTTTTCTTT CAACACCCTC GCCATAGGTA ATCGAGAGGG CAAAATATAT GTTTGGGAGC CACAAGCAAG TCCCCCAAAT CTGCTCGCGA AGTTGTGTGC CAGTGGTTGC AAGTCCCCAA TTCGACAGAC CGCTACATCA TATGATGGAA GTATCATCTT GTGCTGCTGT GAGGACGGTA CAATATGGAG GTGGGATGCT GTTGCACCTA TAGGTCCAAC CAACCTGCAT TAGCGAAGAT ACTACACAAA GATCGTGTGA TTGCTGTTGA TCAGACTGGC ATTAGATTCT GCACTAGGAA GGCGAAAGCA ACCAAAGTGT ACCAGTAAAT ATACATGGAC ATGCTTGAAA TTGGAGATGG ATGGAACTGT CGATGAGCTC GAATATCAGA GTAAAGGCAG TTAGTATCAT AAGCCTTTTG AGTTTTCATT ACAATTGGCA ACTTGTTTGC AGCGTGACTT GGCAGAAGCT ATCCAAAGCA TAGTCTCAAT ATTTTAGCCT CATTTCGCCA CTATAGCTAT TATCAGTTTC CTATACATTC AGGACTTCCC ATGGCTCCCT TGTCTTCCGG GTTGAACTAT GTTTGGACTC TTTCGGCATC TCCTGTGTCT CTAAAGGGGT TTCGTGTTAC AGATACAGTG TTTCTGTACT AGTAGGATAG ACTTAGGATT TTTTGAAAGA CGGCTTTAGT TTTGACACAA TTTCCGAGCA GAATATGACT GAAGGTTACC CAGAGAAATA AGATTTTGTA CCTTATTTCT CGGCCAATTG TAAAATTGCA GAAAGTGATC TTTGCGAGTC CAAGTGGAAA CAAAAAAGAT GGGAAGACAC ATTAAGATGT ACAAGAGTGA TTATTTGAAC CTAGCCCCTA GTATCTCCCT TCGGGGCAGG GCTCGAAGGG AGCAGGGTTC GAATAACTAG GGGCAGGGTT CGAATTGTTT ATAAACAAAA CTCCATGACA TTTATTATAG AATTACTGCT ATCAAATAAT CTAGTGGGAT TAGCTTTGTA TAAAACTTAT TTGTGTTCAT TGTAGAGTAT TATGTTACCA CAATTAGAGA GGTTAACGAA TGGAATTATC ATCATAACTC ACTTCATTTC CAAGGGTCTA AGTACAATTC ATATAGTGAA CAAACTGCAC TGCGTATAGC ATCACTCTCG ATTTTTTTAC ATTTCTGCAC ATTGGTGTTG TGAAATTTAG CCATATCTCT TGCAAACTTT TTTCTGTTCA ATGGTTTGCA TCAAAAGCCA ATTTCTGTTT CATGAGTAAA CACCA |
CDS |
| >Mp3g06080.1 ATGGCGGGGA AATCGGTACC TTTCGGAAAT GAGCCGGTAG AAGGTGTAGT AACGATCTTG AAAAAGAAGC GAGACTACAA AGTTTGCAAT CGTATGGCAG AAGGCAAACG ACCACTATAT GCCATCACCT TCAATTTTCT GGACTCGCGT TTCTTCAGCT TGTTTGCCAC TGCTGGCGGC AATCGGGTGA CTGTGTACGA TTGCCTAGAA GGAGGGGCGA TTGGGATCCT TCAGGCTTAT GTCGACGAAG ATAAAGACGA ATCATTCTAC ACTGTCTGCT GGGCATCTGA CAACGCAGGG ACTCCTTTGT TGGTCGCTAG TGGGAGCAAT GGCGTCATTA GAATTATTGA CTGTAGCACA GAGAATCTAT TGAGGAGTCT TTTGGGGCAT GGCGATTCTG TGAATGAACT TCGAACACAG TCCATGAAGC CTAGCCTTGT AGTATCGGCA AGCAAGGATG AATCATTACG ACTCTGGAAT GTTACCACCA ATGTGTGTAT CCTCATACTG GCTGGTGCCG GAGGTCATCG TAACGAGGTC CTCAGTGTGG ATTTTCATCC ATCTGATGTG AATCAAATCG CGAGCTGCGG GATGGACAAT ACCATCAAAA TTTGGAACAT TAAAGATTTT TGGGTGTATG TTGAGAAGTC ATTCTCGTGG ACCGACTCAC CATCAACGTT TCCCACTAAA TATGTGCAAT TTCCTGTCTT CAATGCTTTG GTTCACTCTA ACTATGTGGA CTGCACCCGC TGGCTGGGGG ATTTCATCCT TTCGAAGAGT GTTGACAATG AGATCGTTTT GTGGGAGCCT ATGTTCAAAG AACACGGAAC AGAGGGAGTC GTGGACATAC TTCAAAAGTA TCCTGTTCCC GAATGCGACA TCTGGTTTAT CAAGTTCTCC TGCGATTTTT CTTTCAACAC CCTCGCCATA GGTAATCGAG AGGGCAAAAT ATATGTTTGG GAGCCACAAG CAAGTCCCCC AAATCTGCTC GCGAAGTTGT GTGCCAGTGG TTGCAAGTCC CCAATTCGAC AGACCGCTAC ATCATATGAT GGAAGTATCA TCTTGTGCTG CTGTGAGGAC GGTACAATAT GGAGGTGGGA TGCTGTTGCA CCTATAGGTC CAACCAACCT GCATTAG |
Protein |
| >Mp3g06080.1 MAGKSVPFGN EPVEGVVTIL KKKRDYKVCN RMAEGKRPLY AITFNFLDSR FFSLFATAGG NRVTVYDCLE GGAIGILQAY VDEDKDESFY TVCWASDNAG TPLLVASGSN GVIRIIDCST ENLLRSLLGH GDSVNELRTQ SMKPSLVVSA SKDESLRLWN VTTNVCILIL AGAGGHRNEV LSVDFHPSDV NQIASCGMDN TIKIWNIKDF WVYVEKSFSW TDSPSTFPTK YVQFPVFNAL VHSNYVDCTR WLGDFILSKS VDNEIVLWEP MFKEHGTEGV VDILQKYPVP ECDIWFIKFS CDFSFNTLAI GNREGKIYVW EPQASPPNLL AKLCASGCKS PIRQTATSYD GSIILCCCED GTIWRWDAVA PIGPTNLH |