Mp3g06390
Description
Annotation
| Database | ID | Description |
|---|---|---|
| CDD | cd15841 | SNARE_Qc |
| SUPERFAMILY | SSF58038 | SNARE fusion complex |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| FunFam | G3DSA:1.20.5.110:FF:000056 | Bet1-like protein At4g14600 |
| Coils | Coil | Coil |
| Gene3D | G3DSA:1.20.5.110 | - |
| ProSiteProfiles | PS50192 | t-SNARE coiled-coil homology domain profile. |
| PANTHER | PTHR12791 | GOLGI SNARE BET1-RELATED |
| KEGG | K08505 | protein transport protein SFT1 |
| KOG | KOG3385 | V-SNARE; N-term missing; [U] |
| MapolyID | Mapoly0006s0109 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpSFT1 | Ortholog of Arabidopsis SFT1 genes | Published |
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis SFT1 genes; The transcript is detected in thalli, antheridiophores, archegoniophores, and sporelings. Citrine-tagged MpSFT1 driven by the cauliflower mosaic virus 35S promoter is localized to the Golgi apparatus. (from nomenclature)
0 core 1 peripheral
Kanazawa, T., et al. (2020)
· Nature Communications research experimental tool
Golgi SNARE marker; compartment control.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g06390 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g06390.1 CGGAGGCTGC AGACGAGACG AGGATTGGTC GCCGGGGTGC GCGTGACACG GCTTCAGAGA GTACAGTAAT CGGATATTTG ATGATTCCGG CTTCTGTATG AGTCGAATCT GATCTGAGTT TCCGCACGGA GGACGAGGAG GGTGGCGAGA GTGGACGAAT TCGAGTGAGA CGCCTTGCCT TTGAAGATTG AGCAGCAGAG CGAGCAGGAG AGGAAGGATC GGGCAGATTC CCCGTGCAGG AAAACGCAGC CACGACGGTA GGAGGAAGAG AAGATAGATA GAGGCAGAGC GAAGTGGAGG CTCGAGCGGG TCGATACGCG CAGGCGCTTC TTGTTTCGCG AGGTCGGCAT CGTGTTGACG TAAGCGGAAC GGCGAGGAGA TCGGGCCACC GTAAGCGGGG CATAGTTGAA TCGCAAGCGT AGGGCTTGGT CTGAGCAACA GCGTTTTGCA GACAGGGCTT CGCGATCGCT TCCCAGACCT CGATTCGAGA GATGATGGCC TTACATCTGA GAAGGACTAG AACCGGTAAT CGCTAGCTGA CAATGCCAAC ACAGGACGTC GAGTACCAGT CTTCGAGAAG TTCGCGGATT TTGGTCGAAG AGATTGCGTG ATTTGATCGG AGACCTGTTT TCGGGTGATG GCCAAGGGAT CGAAGAGCAC CAGGTGTGGT GAATCGACGC ATGGATTGTA AACTTATCGC TCTTAACTAT CTGGGAGTCC GTTTCTATCT CTTTTGCCAA CGGTAGTGAT GGATGCCTTG TTTTGGTTGT AGGCCTGGGC TCAGCAACAG GGCTCCAGCA CACCAAGATC AAGTGCAACT AGGAGGGCAT TCCATATATG GGGATATCGA CGAGGAAATT GGTGGCTTAA TTGTGAAAGT TGACCAGCTG AAGAATGTGA GTTTCATCTC TCTGTGGGTA CAATTACACA CTGAAATCGA CGCTCTGCGT TGTGTGTACC AAGCGCTACA TGCTTGGTTA CAGACGAAGC AATGTCAGCT TTAGGTTGTG GCTGGAGTTC TTGGTGATAT TTACTTCGCG ATCACTCGTT AGTAATGTTT TTCGACTTCG TGCTTACAAC TCCCGTCAGC TGGCGAACAA TATACCAACC CAGTTGGAGT TTTTTTTTCG GACTCAGCCC TTTTATACAA GACAATATTG GGTTTGATCA TCAGTTAGCT CCTTTGAAAT AATCTCGTTT TGCGTTGGGC TTCTTCTTTC AGATGCTTGC CATGCTGGCA AAAGTTTAGA AACGAGATCG CGGTATATTT TGGAAGTCTG TAGATTTAGA TGCTTGTCTC CCTTGAAGCT GTGATTTGTG TGATGACCAT AATTGGGCTT GATGCCAAGG AGTAAATTAC GCTTAATGAT CAATTGTTGG CCTCGTGGCT TGGGCTTTCA GATTGCACAG GTGATAGAAA CAGAGACAAA GTATCAAAAT GAGCTTCTCA ACCAACTTGT GAGTGTCTAA CAGCTTTACT TTGATAATTT TAGGAATCTG CTTACGTCTC TAGGTCCACT TCAGTCTTCG CTCGTACAGT GATTTTTTTA ATCCTTTTCC CATTTTTCAT ACAAACTGAA AGTCATGTCC ATTAAAGTTT CTACCGCGAT AATCTGAGAT AGAACAAGAA GATGAAAAAA TTCTGAATGT GTTTTACTGA CTTCAGGAGG AGACGATGGC CAAAGCACAA GCCGGGGTAA AAACTGCCAT GAAAAGGATG AGCAAAAGTG TTATACAAAA CGGCTCCAAT CATCTGCTGC ACGTTGTGTT GTTCGGAATC CTGTTCTTCA CCCTCCTCTA TTTGTGGGCT AAATTCCTTA GATAAGTCTA GATTTCTAGT ATTCAGCTGG TTCAAATGAC TATGATTTAG AGGTTAGAGA CAACTGTACA TGTGGTAGGA ACCAGTAAGC AAATTCTTTT TCTCGTGTCT GGAGCTGGTG ACAATCAGAG ATCATTTTAT TACTAAAAGC AAGCCCATGT AACCAAAAGC TTTTAGGAGC TACTTGCTGG AGTCAAGAAG CTCCATAACA GTGAAACGTG TTCTGAGCTT TCTAGTTGGT CAGCTACGCA TTGGTGAGGG CGTCTCTTGT GATATTGGCA GGCAGAAAAA TATACCCACT TGTTTGCGGG TCTTCCCTAG CTTAGCGTTT CAAATGACTG GGAAGAAAAG AATCAAAGAG GAATGGCCTT GGACGGGAAA AACGAGGGTG CCATTTGAGA GTGAGGACAG GTTCTTGTCT CTGTGGGATG TTTCTCCATT GACGAGTTAA GATCGAAGTT TTCAACTGTA GTCGAGAAAA CCCTTACTAA TTAATTGGCA TCTTAGCTCT ACCGACTCTA CCGAGTCGTT GCTCAACGCA GCCGCAGCGT AGGGCTTTCC ATATAGGCTG AAAATCCCTG AGATAATTTT TGGCTGCTCC AGGTGAGCAA GGTACAGCGT GGTTCACAGT GCCAAAGGTG GTCCTGTTGA CCCGTCTATA CACAGGGTTC ATTCATCTGT GGCTCACGGT TAGCAATTAA CAGGGTGGTC ACCCATTTGC ATTCTCTGCT GGTTCAGAGG GTGCAACCCT TTGGAACTGT CTGAAGACAT TGCCCGATAT TTAAAGGCTC GGGGTGAGTA CAGCACGCTT TGCTTTGTGC CATTGGTCAC TTGGTCTTCT AGACTGCCAT GAATTGAAGT GTATATTTTT TTATCAAGAT CGTTTGCAGT ATCTGACTGC GTTTGAGGAC ATTGTTACTA CTAGCCATAT ATAGTCTGCT ATTACCGAAT TGGGGTGTTT TAAAGTGTAG AGCATTTGAT CTGATTTAAC CTCGGCCATA TCTCGACAGT TATCTGTTTT AAATACTGGC AAGCAGG |
mRNA UTR + CDS |
| >Mp3g06390.1 CGGAGGCTGC AGACGAGACG AGGATTGGTC GCCGGGGTGC GCGTGACACG GCTTCAGAGA GTACAGTAAT CGGATATTTG ATGATTCCGG CTTCTGTATG AGTCGAATCT GATCTGAGTT TCCGCACGGA GGACGAGGAG GGTGGCGAGA GTGGACGAAT TCGAGTGAGA CGCCTTGCCT TTGAAGATTG AGCAGCAGAG CGAGCAGGAG AGGAAGGATC GGGCAGATTC CCCGTGCAGG AAAACGCAGC CACGACGGTA GGAGGAAGAG AAGATAGATA GAGGCAGAGC GAAGTGGAGG CTCGAGCGGG TCGATACGCG CAGGCGCTTC TTGTTTCGCG AGGTCGGCAT CGTGTTGACG TAAGCGGAAC GGCGAGGAGA TCGGGCCACC GTAAGCGGGG CATAGTTGAA TCGCAAGCGT AGGGCTTGGT CTGAGCAACA GCGTTTTGCA GACAGGGCTT CGCGATCGCT TCCCAGACCT CGATTCGAGA GATGATGGCC TTACATCTGA GAAGGACTAG AACCGGTAAT CGCTAGCTGA CAATGCCAAC ACAGGACGTC GAGTACCAGT CTTCGAGAAG TTCGCGGATT TTGGTCGAAG AGATTGCGTG ATTTGATCGG AGACCTGTTT TCGGGTGATG GCCAAGGGAT CGAAGAGCAC CAGGCCTGGG CTCAGCAACA GGGCTCCAGC ACACCAAGAT CAAGTGCAAC TAGGAGGGCA TTCCATATAT GGGGATATCG ACGAGGAAAT TGGTGGCTTA ATTGTGAAAG TTGACCAGCT GAAGAATATT GCACAGGTGA TAGAAACAGA GACAAAGTAT CAAAATGAGC TTCTCAACCA ACTTGAGGAG ACGATGGCCA AAGCACAAGC CGGGGTAAAA ACTGCCATGA AAAGGATGAG CAAAAGTGTT ATACAAAACG GCTCCAATCA TCTGCTGCAC GTTGTGTTGT TCGGAATCCT GTTCTTCACC CTCCTCTATT TGTGGGCTAA ATTCCTTAGA TAAGTCTAGA TTTCTAGTAT TCAGCTGGTT CAAATGACTA TGATTTAGAG GTTAGAGACA ACTGTACATG TGGTAGGAAC CAGTAAGCAA ATTCTTTTTC TCGTGTCTGG AGCTGGTGAC AATCAGAGAT CATTTTATTA CTAAAAGCAA GCCCATGTAA CCAAAAGCTT TTAGGAGCTA CTTGCTGGAG TCAAGAAGCT CCATAACAGT GAAACGTGTT CTGAGCTTTC TAGTTGGTCA GCTACGCATT GGTGAGGGCG TCTCTTGTGA TATTGGCAGG CAGAAAAATA TACCCACTTG TTTGCGGGTC TTCCCTAGCT TAGCGTTTCA AATGACTGGG AAGAAAAGAA TCAAAGAGGA ATGGCCTTGG ACGGGAAAAA CGAGGGTGCC ATTTGAGAGT GAGGACAGGT TCTTGTCTCT GTGGGATGTT TCTCCATTGA CGAGTTAAGA TCGAAGTTTT CAACTGTAGT CGAGAAAACC CTTACTAATT AATTGGCATC TTAGCTCTAC CGACTCTACC GAGTCGTTGC TCAACGCAGC CGCAGCGTAG GGCTTTCCAT ATAGGCTGAA AATCCCTGAG ATAATTTTTG GCTGCTCCAG GTGAGCAAGG TACAGCGTGG TTCACAGTGC CAAAGGTGGT CCTGTTGACC CGTCTATACA CAGGGTTCAT TCATCTGTGG CTCACGGTTA GCAATTAACA GGGTGGTCAC CCATTTGCAT TCTCTGCTGG TTCAGAGGGT GCAACCCTTT GGAACTGTCT GAAGACATTG CCCGATATTT AAAGGCTCGG GGTGAGTACA GCACGCTTTG CTTTGTGCCA TTGGTCACTT GGTCTTCTAG ACTGCCATGA ATTGAAGTGT ATATTTTTTT ATCAAGATCG TTTGCAGTAT CTGACTGCGT TTGAGGACAT TGTTACTACT AGCCATATAT AGTCTGCTAT TACCGAATTG GGGTGTTTTA AAGTGTAGAG CATTTGATCT GATTTAACCT CGGCCATATC TCGACAGTTA TCTGTTTTAA ATACTGGCAA GCAGG |
CDS |
| >Mp3g06390.1 ATGGCCAAGG GATCGAAGAG CACCAGGCCT GGGCTCAGCA ACAGGGCTCC AGCACACCAA GATCAAGTGC AACTAGGAGG GCATTCCATA TATGGGGATA TCGACGAGGA AATTGGTGGC TTAATTGTGA AAGTTGACCA GCTGAAGAAT ATTGCACAGG TGATAGAAAC AGAGACAAAG TATCAAAATG AGCTTCTCAA CCAACTTGAG GAGACGATGG CCAAAGCACA AGCCGGGGTA AAAACTGCCA TGAAAAGGAT GAGCAAAAGT GTTATACAAA ACGGCTCCAA TCATCTGCTG CACGTTGTGT TGTTCGGAAT CCTGTTCTTC ACCCTCCTCT ATTTGTGGGC TAAATTCCTT AGATAA |
Protein |
| >Mp3g06390.1 MAKGSKSTRP GLSNRAPAHQ DQVQLGGHSI YGDIDEEIGG LIVKVDQLKN IAQVIETETK YQNELLNQLE ETMAKAQAGV KTAMKRMSKS VIQNGSNHLL HVVLFGILFF TLLYLWAKFL R |
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g06390.2 TTTTCGACTT CGTGCTTACA ACTCCCGTCA GCTGGCGAAC AATATACCAA CCCAGTTGGA GTTTTTTTTT CGGACTCAGC CCTTTTATAC AAGACAATAT TGGGTTTGAT CATCAGTTAG CTCCTTTGAA ATAATCTCGT TTTGCGTTGG GCTTCTTCTT TCAGATGCTT GCCATGCTGG CAAAAGTTTA GAAACGAGAT CGCGGTATAT TTTGGAAGTC TGTAGATTTA GATGCTTGTC TCCCTTGAAG CTGTGATTTG TGTGATGACC ATAATTGGGC TTGATGCCAA GGAGTAAATT ACGCTTAATG ATCAATTGTT GGCCTCGTGG CTTGGGCTTT CAGATTGCAC AGGTGATAGA AACAGAGACA AAGTATCAAA ATGAGCTTCT CAACCAACTT GTGAGTGTCT AACAGCTTTA CTTTGATAAT TTTAGGAATC TGCTTACGTC TCTAGGTCCA CTTCAGTCTT CGCTCGTACA GTGATTTTTT TAATCCTTTT CCCATTTTTC ATACAAACTG AAAGTCATGT CCATTAAAGT TTCTACCGCG ATAATCTGAG ATAGAACAAG AAGATGAAAA AATTCTGAAT GTGTTTTACT GACTTCAGGA GGAGACGATG GCCAAAGCAC AAGCCGGGGT AAAAACTGCC ATGAAAAGGA TGAGCAAAAG TGTTATACAA AACGGCTCCA ATCATCTGCT GCACGTTGTG TTGTTCGGAA TCCTGTTCTT CACCCTCCTC TATTTGTGGG CTAAATTCCT TAGATAAGTC TAGATTTCTA GTATTCAGCT GGTTCAAATG ACTATGATTT AGAGGTTAGA GACAACTGTA CATGTGGTAG GAACCAGTAA GCAAATTCTT TTTCTCGTGT CTGGAGCTGG TGACAATCAG AGATCATTTT ATTACTAAAA GCAAGCCCAT GTAACCAAAA GCTTTTAGGA GCTACTTGCT GGAGTCAAGA AGCTCCATAA CAGTGAAACG TGTTCTGAGC TTTCTAGTTG GTCAGCTACG CATTGGTGAG GGCGTCTCTT GTGATATTGG CAGGCAGAAA AATATACCCA CTTGTTTGCG GGTCTTCCCT AGCTTAGCGT TTCAAATGAC TGGGAAGAAA AGAATCAAAG AGGAATGGCC TTGGACGGGA AAAACGAGGG TGCCATTTGA GAGTGAGGAC AGGTTCTTGT CTCTGTGGGA TGTTTCTCCA TTGACGAGTT AAGATCGAAG TTTTCAACTG TAGTCGAGAA AACCCTTACT AATTAATTGG CATCTTAGCT CTACCGACTC TACCGAGTCG TTGCTCAACG CAGCCGCAGC GTAGGGCTTT CCATATAGGC TGAAAATCCC TGAGATAATT TTTGGCTGCT CCAGGTGAGC AAGGTACAGC GTGGTTCACA GTGCCAAAGG TGGTCCTGTT GACCCGTCTA TACACAGGGT TCATTCATCT GTGGCTCACG GTTAGCAATT AACAGGGTGG TCACCCATTT GCATTCTCTG CTGGTTCAGA GGGTGCAACC CTTTGGAACT GTCTGAAGAC ATTGCCCGAT ATTTAAAGGC TCGGGGTGAG TACAGCACGC TTTGCTTTGT GCCATTGGTC ACTTGGTCTT CTAGACTGCC ATGAATTGAA GTGTATATTT TTTTATCAAG ATCGTTTGCA GTATCTGACT GCGTTTGAGG ACATTGTTAC TACTAGCCAT ATATAGTCTG CTATTACCGA ATTGGGGTGT TTTAAAGTGT AGAGCATTTG ATCTGATTTA ACCTCGGCCA TATCTCGACA GTTATCTGTT TTAAATACTG GCAAGCAGG |
mRNA UTR + CDS |
| >Mp3g06390.2 TTTTCGACTT CGTGCTTACA ACTCCCGTCA GCTGGCGAAC AATATACCAA CCCAGTTGGA GTTTTTTTTT CGGACTCAGC CCTTTTATAC AAGACAATAT TGGGTTTGAT CATCAGTTAG CTCCTTTGAA ATAATCTCGT TTTGCGTTGG GCTTCTTCTT TCAGATGCTT GCCATGCTGG CAAAAGTTTA GAAACGAGAT CGCGGTATAT TTTGGAAGTC TGTAGATTTA GATGCTTGTC TCCCTTGAAG CTGTGATTTG TGTGATGACC ATAATTGGGC TTGATGCCAA GGAGTAAATT ACGCTTAATG ATCAATTGTT GGCCTCGTGG CTTGGGCTTT CAGATTGCAC AGGTGATAGA AACAGAGACA AAGTATCAAA ATGAGCTTCT CAACCAACTT GAGGAGACGA TGGCCAAAGC ACAAGCCGGG GTAAAAACTG CCATGAAAAG GATGAGCAAA AGTGTTATAC AAAACGGCTC CAATCATCTG CTGCACGTTG TGTTGTTCGG AATCCTGTTC TTCACCCTCC TCTATTTGTG GGCTAAATTC CTTAGATAAG TCTAGATTTC TAGTATTCAG CTGGTTCAAA TGACTATGAT TTAGAGGTTA GAGACAACTG TACATGTGGT AGGAACCAGT AAGCAAATTC TTTTTCTCGT GTCTGGAGCT GGTGACAATC AGAGATCATT TTATTACTAA AAGCAAGCCC ATGTAACCAA AAGCTTTTAG GAGCTACTTG CTGGAGTCAA GAAGCTCCAT AACAGTGAAA CGTGTTCTGA GCTTTCTAGT TGGTCAGCTA CGCATTGGTG AGGGCGTCTC TTGTGATATT GGCAGGCAGA AAAATATACC CACTTGTTTG CGGGTCTTCC CTAGCTTAGC GTTTCAAATG ACTGGGAAGA AAAGAATCAA AGAGGAATGG CCTTGGACGG GAAAAACGAG GGTGCCATTT GAGAGTGAGG ACAGGTTCTT GTCTCTGTGG GATGTTTCTC CATTGACGAG TTAAGATCGA AGTTTTCAAC TGTAGTCGAG AAAACCCTTA CTAATTAATT GGCATCTTAG CTCTACCGAC TCTACCGAGT CGTTGCTCAA CGCAGCCGCA GCGTAGGGCT TTCCATATAG GCTGAAAATC CCTGAGATAA TTTTTGGCTG CTCCAGGTGA GCAAGGTACA GCGTGGTTCA CAGTGCCAAA GGTGGTCCTG TTGACCCGTC TATACACAGG GTTCATTCAT CTGTGGCTCA CGGTTAGCAA TTAACAGGGT GGTCACCCAT TTGCATTCTC TGCTGGTTCA GAGGGTGCAA CCCTTTGGAA CTGTCTGAAG ACATTGCCCG ATATTTAAAG GCTCGGGGTG AGTACAGCAC GCTTTGCTTT GTGCCATTGG TCACTTGGTC TTCTAGACTG CCATGAATTG AAGTGTATAT TTTTTTATCA AGATCGTTTG CAGTATCTGA CTGCGTTTGA GGACATTGTT ACTACTAGCC ATATATAGTC TGCTATTACC GAATTGGGGT GTTTTAAAGT GTAGAGCATT TGATCTGATT TAACCTCGGC CATATCTCGA CAGTTATCTG TTTTAAATAC TGGCAAGCAG G |
CDS |
| >Mp3g06390.2 ATGCCAAGGA GTAAATTACG CTTAATGATC AATTGTTGGC CTCGTGGCTT GGGCTTTCAG ATTGCACAGG TGATAGAAAC AGAGACAAAG TATCAAAATG AGCTTCTCAA CCAACTTGAG GAGACGATGG CCAAAGCACA AGCCGGGGTA AAAACTGCCA TGAAAAGGAT GAGCAAAAGT GTTATACAAA ACGGCTCCAA TCATCTGCTG CACGTTGTGT TGTTCGGAAT CCTGTTCTTC ACCCTCCTCT ATTTGTGGGC TAAATTCCTT AGATAA |
Protein |
| >Mp3g06390.2 MPRSKLRLMI NCWPRGLGFQ IAQVIETETK YQNELLNQLE ETMAKAQAGV KTAMKRMSKS VIQNGSNHLL HVVLFGILFF TLLYLWAKFL R |