Mp3g07970



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
CDD cd01647 RT_LTR
Pfam PF03732 Retrotransposon gag protein
Coils Coil Coil
CDD cd00303 retropepsin_like
Pfam PF17921 Integrase zinc binding domain
Gene3D G3DSA:3.10.10.10 HIV Type 1 Reverse Transcriptase, subunit A, domain 1
ProSiteProfiles PS50994 Integrase catalytic domain profile.
SUPERFAMILY SSF53098 Ribonuclease H-like
SUPERFAMILY SSF50630 Acid proteases
PANTHER PTHR37984 PROTEIN CBG26694
FunFam G3DSA:3.30.420.10:FF:000032 Retrovirus-related Pol polyprotein from transposon 297-like Protein
SUPERFAMILY SSF56672 DNA/RNA polymerases
Gene3D G3DSA:3.30.420.10 -
Pfam PF00665 Integrase core domain
Pfam PF17919 RNase H-like domain found in reverse transcriptase
Gene3D G3DSA:1.10.340.70 -
Gene3D G3DSA:3.30.70.270 -
FunFam G3DSA:3.30.70.270:FF:000020 Transposon Tf2-6 polyprotein-like Protein
CDD cd09274 RNase_HI_RT_Ty3
Gene3D G3DSA:2.40.70.10 Acid Proteases
Pfam PF00078 Reverse transcriptase (RNA-dependent DNA polymerase)
KOG KOG4274 Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II; N-term missing; C-term missing; [K]
MapolyID Mapoly0184s0001 -
GO GO:0003676 nucleic acid binding
GO GO:0015074 DNA integration

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Peroxidase; DEG.

0 core 1 peripheral

Jibran, R., et al. (2024b) · Frontiers in Plant Science  research experimental background
Peroxidase; DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g07970.1 chr3:8155363..8162765 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g07970 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g07970 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.