Mp3g08790



Description

Annotation

Database ID Description
SUPERFAMILY SSF140990 FtsH protease domain-like
NCBIfam TIGR01241 ATP-dependent zinc metalloprotease FtsH
FunFam G3DSA:1.20.58.760:FF:000001 ATP-dependent zinc metalloprotease FtsH
FunFam G3DSA:3.30.720.210:FF:000003 ATP-dependent zinc metalloprotease FTSH, chloroplastic
FunFam G3DSA:1.10.8.60:FF:000001 ATP-dependent zinc metalloprotease FtsH
CDD cd19501 RecA-like_FtsH
PANTHER PTHR23076 METALLOPROTEASE M41 FTSH
Gene3D G3DSA:1.10.8.60 -
FunFam G3DSA:3.40.50.300:FF:000001 ATP-dependent zinc metalloprotease FtsH
Pfam PF00004 ATPase family associated with various cellular activities (AAA)
ProSitePatterns PS00674 AAA-protein family signature.
Pfam PF17862 AAA+ lid domain
Gene3D G3DSA:3.40.50.300 -
SMART SM00382 AAA_5
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
Gene3D G3DSA:1.20.58.760 Peptidase M41
Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH].
Pfam PF01434 Peptidase family M41
Gene3D G3DSA:3.30.720.210 -
KEGG K03798 cell division protease FtsH [EC:3.4.24.-]
KOG KOG0731 AAA+-type ATPase containing the peptidase M41 domain; N-term missing; [O]
MapolyID Mapoly0105s0038 -
GO GO:0004222 metalloendopeptidase activity
GO GO:0005524 ATP binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0004176 ATP-dependent peptidase activity
GO GO:0006508 proteolysis
GO GO:0016020 membrane

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

UVB-induced chloroplastic FTSH ATP-dependent zinc metalloprotease (annotation).

0 core 1 peripheral

Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced chloroplastic FTSH ATP-dependent zinc metalloprotease (annotation).

Transcript models

Transcript ID Location Sequences Extract region
Mp3g08790.1 chr3:9170893..9174854 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g08790 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g08790 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.