Mp3g09350



Description

Annotation

Database ID Description
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
SMART SM00717 sant
Pfam PF00249 Myb-like DNA-binding domain
SUPERFAMILY SSF46689 Homeodomain-like
MobiDBLite mobidb-lite consensus disorder prediction
FunFam G3DSA:1.10.10.60:FF:000010 Transcriptional activator Myb isoform A
Gene3D G3DSA:1.10.10.60 -
ProSiteProfiles PS50090 Myb-like domain profile.
CDD cd00167 SANT
PANTHER PTHR45614 MYB PROTEIN-RELATED
KOG KOG0048 Transcription factor, Myb superfamily; C-term missing; [K]
KOG KOG1103 Predicted coiled-coil protein; N-term missing; [S]
MapolyID Mapoly0085s0092 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0005634 nucleus
GO GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific

Nomenclature

Gene symbol Product Transcript ID Status
MpR2R3-MYB15 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, MYB (from nomenclature)

0 core 1 peripheral

Jiang, C.-K., et al. (2020) · Plant Physiology  research sequence comparator
Subfamily-I R2R3-MYB sequence used in the phylogeny.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g09350.1 chr3:9800769..9805705 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g09350 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g09350 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.