Mp3g10500
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Coils | Coil | Coil |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| ProSiteProfiles | PS50090 | Myb-like domain profile. |
| Pfam | PF13837 | Myb/SANT-like DNA-binding domain |
| SMART | SM00717 | sant |
| PANTHER | PTHR33492 | OSJNBA0043A12.37 PROTEIN-RELATED |
| Gene3D | G3DSA:1.10.10.60 | - |
| SUPERFAMILY | SSF46689 | Homeodomain-like |
| KOG | KOG4282 | Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain; C-term missing; [K] |
| MapolyID | Mapoly0037s0146 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpTRIHELIX16 | transcription factor, Trihelix | Published |
Associated Literature (AI-based literature mining, Beta-version)
transcription factor, Trihelix (from nomenclature)
0 core 1 peripheral
Jibran, R., et al. (2024b)
· Frontiers in Plant Science research experimental background
TRIHELIX16 TF (Mp3g10500); DEG.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g10500 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g10500.1 TCGCGAGGCC TCCTCGTGCT CGTGCTCGTG CTCAATCTGC TCTTCACCCT CGCCCCGAGG GCACGACCGC GAATGCACCC AGCAGCGAAT GGACGATCGG AAGAGTGAGC TCAGAGTTGT GCCTGGCGAT CTCTGATTGC GGGGTCCGGG AAGGAAGTCA GGCGAAATTG GCACCGCCTT CAGGGCGAAG ATTCGATGGT AGCAGGGAGC AGAAGAGAGC AGCGGGGGCG CAAGAATGCT GTAGGGCGAG GCTCCTGCTC TCGGCTGTCG GCGGCGGAGT GTTGCGAGTG GGTCGGAATG TGCAGCCGCG CGCTCACGGA TGCGGAGGGA GGGATTGTGA GGCGGATGTG AGACGGCGGG CGGGGGCGAT CTCAGCTGAG CGGCGTGGAT TGGGATGGGA TTGAGGAGGA GGCGGAGGCG GTGGAGTTGA ATGCGGTGCG GAGTGAGGGC ATCGAGTGGT TGCGTCGCCA CCCCAACACG TTGCGCGCCG TAGAGCGCAG GCGAGGCGAG GCTTCCAAAA TTTCAGGTGG CGAAGAACTA GAATGGGAAC TGGATTGTTG TAATCCAGGC TCGGATGCAG ACATGGAGGG CGAGAACGGA GAGGCGTCGG ATCCCACCCA AGAGGTGGCC ACGCTGAATC TCTCCGCCTG CCCCCATACC CCGAGCGCGT TCCCAACTCC CGCCACTTCC GATTGCAACG GAGGCCCGGG AGGAGCCCGG ACCCAATCCA ACAACAAGAA GCGCAGCCGC AGTGCGCCAT GGACCGTGTC CGAGATGCTG ACGCTGATCG ACGCGAAGAA GGAGGAGCGA GAGCGATGCC AGATGTACAA GCTCCAAGGC GTGAAACTCC CCGCAGCTGA GAAGTGGAGG ATTGTTGCCA CGCACATGGA GACCAAGGAC ATGGGCAGAA GCGGCAGCCA GTGTCAGGAC AAGTGGGAGA ACATGATGAA AGACTACAAG GCTGTGCGCG AGTGGCAGTA CATCATGAAT CCCACGGGCA AGAACTACTT CAAAGAGATG ACCAACAAGG AGCGCAAGGA CGCCAGCCTT CCTCCGCAGA TGGACGAAGT TGTGTTTTAC AGTTTGCACG CCATTCAGAA CGAGAAAGAA GAGAAGAAAG ACAAAGCCCG CCGGAAGATT GAACGAGACA GTTTCAAGCA ACCGAATGTA GGAAATTCTC TTCCCGTAGG CACCTTGGCG ACCAAAGACA AGGTGGGCAC ATTCTGTCCG CTCCCCATCC CTCCACTATC CGACTTCCCG TTTGGAGTCC GCATCAGATT CTCGTTCAAG CAATCATCAC GTCGTCTAAT AATCTAACAA GATGATACAA CACCCAGACC CTCACCTCAC CTCACCTCAG CCTGTGAGAA ACGAATGTAG AGAGTTTCCG AATTAGCTCG AGCCATTGCA ATTCTCTCTT TGTGTCGAGT CGAGTTTGCT CATATTGAAG TGGCATTATG ATTCGACCGT GAAGGTGGGT AGTAGTGAGG CCAATGACAT GGAGTCCATG GACACGGATT CCAGTGGTAA ACGAAGGAGG AGGAAGAAGG TTGGACAGGA CAAGCCACCC ATCGGCCTGG AGAATCCCGT GGTGCTGGAC GACTTCGTGC ATGCGATGAA AGATGGGTCC AAAGAATTGG TTGAATGCTT CATGAAGGTT TTGGAACGGA ACGAACGTCA GCCATCGGGA GAGCTGGACA CCAAGACCAA AGACACAGCC ACTCTCGCGC AGGTGTTAGT AGCCTTGGCA GATGCGGTCA AGACGATTGC AGAAAAATTA TGATCTCGAC CTCGTGCGAA GAAAATAGAT TCGTCTGTTT CGGCGGAAGC CATCCGTTGC CTCTTTTTCA CACATTTCTG GCAAGCGTTG GAGATTGACA GCTTAGGCTG TTGCTGGCAC ATTCCGATTA CGTAATTTCT ATCTGCAAGC GGCTCTTAGT TGCTCCGTCA ATGGACTCCG CAGACAATCT CTCTTTGTCC AAATCATTTC ACACGAATTT CCCACTGAAG TAGGACTCCC TCTGCTATCA CTAGCCTGCT TTGTGGCCGA ATACCTTCCT CCGTACGCAG AGTGCGCTTG GCTCGACCGA CTCGGACAAC TTCAGCTGCA ATATACGTCA GAAGGTTCTG GTGGCAGCAT AGCTGAATTA TGACCAGAAC CGGGGGTGGT CTTGACCCCG GATTATGTAT CGAAGCAAAC GAACAGATTC TTGCTGATGT ATCAGCTGAA GAGGCAAATT CTTAATCGAT GAATCCGTGT CGCAACACGC TTGCAATACC AGAAATTTGA TGCCCAGAAG GATTCCATAT TTCACTCACT CCCTCTAT |
mRNA UTR + CDS |
| >Mp3g10500.1 TCGCGAGGCC TCCTCGTGCT CGTGCTCGTG CTCAATCTGC TCTTCACCCT CGCCCCGAGG GCACGACCGC GAATGCACCC AGCAGCGAAT GGACGATCGG AAGAGTGAGC TCAGAGTTGT GCCTGGCGAT CTCTGATTGC GGGGTCCGGG AAGGAAGTCA GGCGAAATTG GCACCGCCTT CAGGGCGAAG ATTCGATGGT AGCAGGGAGC AGAAGAGAGC AGCGGGGGCG CAAGAATGCT GTAGGGCGAG GCTCCTGCTC TCGGCTGTCG GCGGCGGAGT GTTGCGAGTG GGTCGGAATG TGCAGCCGCG CGCTCACGGA TGCGGAGGGA GGGATTGTGA GGCGGATGTG AGACGGCGGG CGGGGGCGAT CTCAGCTGAG CGGCGTGGAT TGGGATGGGA TTGAGGAGGA GGCGGAGGCG GTGGAGTTGA ATGCGGTGCG GAGTGAGGGC ATCGAGTGGT TGCGTCGCCA CCCCAACACG TTGCGCGCCG TAGAGCGCAG GCGAGGCGAG GCTTCCAAAA TTTCAGGTGG CGAAGAACTA GAATGGGAAC TGGATTGTTG TAATCCAGGC TCGGATGCAG ACATGGAGGG CGAGAACGGA GAGGCGTCGG ATCCCACCCA AGAGGTGGCC ACGCTGAATC TCTCCGCCTG CCCCCATACC CCGAGCGCGT TCCCAACTCC CGCCACTTCC GATTGCAACG GAGGCCCGGG AGGAGCCCGG ACCCAATCCA ACAACAAGAA GCGCAGCCGC AGTGCGCCAT GGACCGTGTC CGAGATGCTG ACGCTGATCG ACGCGAAGAA GGAGGAGCGA GAGCGATGCC AGATGTACAA GCTCCAAGGC GTGAAACTCC CCGCAGCTGA GAAGTGGAGG ATTGTTGCCA CGCACATGGA GACCAAGGAC ATGGGCAGAA GCGGCAGCCA GTGTCAGGAC AAGTGGGAGA ACATGATGAA AGACTACAAG GCTGTGCGCG AGTGGCAGTA CATCATGAAT CCCACGGGCA AGAACTACTT CAAAGAGATG ACCAACAAGG AGCGCAAGGA CGCCAGCCTT CCTCCGCAGA TGGACGAAGT TGTGTTTTAC AGTTTGCACG CCATTCAGAA CGAGAAAGAA GAGAAGAAAG ACAAAGCCCG CCGGAAGATT GAACGAGACA GTTTCAAGCA ACCGAATGTA GGAAATTCTC TTCCCGTAGG CACCTTGGCG ACCAAAGACA AGGTGGGTAG TAGTGAGGCC AATGACATGG AGTCCATGGA CACGGATTCC AGTGGTAAAC GAAGGAGGAG GAAGAAGGTT GGACAGGACA AGCCACCCAT CGGCCTGGAG AATCCCGTGG TGCTGGACGA CTTCGTGCAT GCGATGAAAG ATGGGTCCAA AGAATTGGTT GAATGCTTCA TGAAGGTTTT GGAACGGAAC GAACGTCAGC CATCGGGAGA GCTGGACACC AAGACCAAAG ACACAGCCAC TCTCGCGCAG GTGTTAGTAG CCTTGGCAGA TGCGGTCAAG ACGATTGCAG AAAAATTATG ATCTCGACCT CGTGCGAAGA AAATAGATTC GTCTGTTTCG GCGGAAGCCA TCCGTTGCCT CTTTTTCACA CATTTCTGGC AAGCGTTGGA GATTGACAGC TTAGGCTGTT GCTGGCACAT TCCGATTACG TAATTTCTAT CTGCAAGCGG CTCTTAGTTG CTCCGTCAAT GGACTCCGCA GACAATCTCT CTTTGTCCAA ATCATTTCAC ACGAATTTCC CACTGAAGTA GGACTCCCTC TGCTATCACT AGCCTGCTTT GTGGCCGAAT ACCTTCCTCC GTACGCAGAG TGCGCTTGGC TCGACCGACT CGGACAACTT CAGCTGCAAT ATACGTCAGA AGGTTCTGGT GGCAGCATAG CTGAATTATG ACCAGAACCG GGGGTGGTCT TGACCCCGGA TTATGTATCG AAGCAAACGA ACAGATTCTT GCTGATGTAT CAGCTGAAGA GGCAAATTCT TAATCGATGA ATCCGTGTCG CAACACGCTT GCAATACCAG AAATTTGATG CCCAGAAGGA TTCCATATTT CACTCACTCC CTCTAT |
CDS |
| >Mp3g10500.1 ATGGAGGGCG AGAACGGAGA GGCGTCGGAT CCCACCCAAG AGGTGGCCAC GCTGAATCTC TCCGCCTGCC CCCATACCCC GAGCGCGTTC CCAACTCCCG CCACTTCCGA TTGCAACGGA GGCCCGGGAG GAGCCCGGAC CCAATCCAAC AACAAGAAGC GCAGCCGCAG TGCGCCATGG ACCGTGTCCG AGATGCTGAC GCTGATCGAC GCGAAGAAGG AGGAGCGAGA GCGATGCCAG ATGTACAAGC TCCAAGGCGT GAAACTCCCC GCAGCTGAGA AGTGGAGGAT TGTTGCCACG CACATGGAGA CCAAGGACAT GGGCAGAAGC GGCAGCCAGT GTCAGGACAA GTGGGAGAAC ATGATGAAAG ACTACAAGGC TGTGCGCGAG TGGCAGTACA TCATGAATCC CACGGGCAAG AACTACTTCA AAGAGATGAC CAACAAGGAG CGCAAGGACG CCAGCCTTCC TCCGCAGATG GACGAAGTTG TGTTTTACAG TTTGCACGCC ATTCAGAACG AGAAAGAAGA GAAGAAAGAC AAAGCCCGCC GGAAGATTGA ACGAGACAGT TTCAAGCAAC CGAATGTAGG AAATTCTCTT CCCGTAGGCA CCTTGGCGAC CAAAGACAAG GTGGGTAGTA GTGAGGCCAA TGACATGGAG TCCATGGACA CGGATTCCAG TGGTAAACGA AGGAGGAGGA AGAAGGTTGG ACAGGACAAG CCACCCATCG GCCTGGAGAA TCCCGTGGTG CTGGACGACT TCGTGCATGC GATGAAAGAT GGGTCCAAAG AATTGGTTGA ATGCTTCATG AAGGTTTTGG AACGGAACGA ACGTCAGCCA TCGGGAGAGC TGGACACCAA GACCAAAGAC ACAGCCACTC TCGCGCAGGT GTTAGTAGCC TTGGCAGATG CGGTCAAGAC GATTGCAGAA AAATTATGA |
Protein |
| >Mp3g10500.1 MEGENGEASD PTQEVATLNL SACPHTPSAF PTPATSDCNG GPGGARTQSN NKKRSRSAPW TVSEMLTLID AKKEERERCQ MYKLQGVKLP AAEKWRIVAT HMETKDMGRS GSQCQDKWEN MMKDYKAVRE WQYIMNPTGK NYFKEMTNKE RKDASLPPQM DEVVFYSLHA IQNEKEEKKD KARRKIERDS FKQPNVGNSL PVGTLATKDK VGSSEANDME SMDTDSSGKR RRRKKVGQDK PPIGLENPVV LDDFVHAMKD GSKELVECFM KVLERNERQP SGELDTKTKD TATLAQVLVA LADAVKTIAE KL |