Mp3g11610



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:3.40.50.300 -
SMART SM00382 AAA_5
Gene3D G3DSA:1.10.8.60 -
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSitePatterns PS00674 AAA-protein family signature.
PANTHER PTHR23077 AAA-FAMILY ATPASE
Pfam PF00004 ATPase family associated with various cellular activities (AAA)
CDD cd19527 RecA-like_PEX6_r2
FunFam G3DSA:3.40.50.300:FF:000109 Peroxisomal biogenesis factor 6
KEGG K13339 peroxin-6
KOG KOG0736 Peroxisome assembly factor 2 containing the AAA+-type ATPase domain; [O]
MapolyID Mapoly0037s0036 -
GO GO:0016558 protein import into peroxisome matrix
GO GO:0005524 ATP binding
GO GO:0016887 ATP hydrolysis activity
GO GO:0005778 peroxisomal membrane
GO GO:0005829 cytosol

Nomenclature

Gene symbol Product Transcript ID Status
MpPEX6 PEX6, AAA complex Published

Associated Literature (AI-based literature mining, Beta-version)

PEX6, AAA complex; AAA complex (from nomenclature)

0 core 1 peripheral

Goto-Yamada, S., et al. (2022) · Frontiers in Cell and Developmental Biology  review citation background
M. polymorpha PEX6 (peroxin/peroxisome biogenesis)

Transcript models

Transcript ID Location Sequences Extract region
Mp3g11610.1 chr3:11993434..12006742 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g11610.2 chr3:11993187..12004578 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g11610 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g11610 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.