Mp3g12680



Description

Annotation

Database ID Description
Pfam PF00520 Ion transport protein
SUPERFAMILY SSF81324 Voltage-gated potassium channels
PANTHER PTHR46988 TWO PORE CALCIUM CHANNEL PROTEIN 1
Gene3D G3DSA:1.20.120.350 -
Gene3D G3DSA:1.10.287.70 -
FunFam G3DSA:1.10.287.70:FF:000215 Predicted protein
KOG KOG2301 Voltage-gated Ca2+ channels, alpha1 subunits; C-term missing; [PT]
MapolyID Mapoly0050s0061 -
GO GO:0055085 transmembrane transport
GO GO:0005216 monoatomic ion channel activity
GO GO:0005245 voltage-gated calcium channel activity
GO GO:0006811 monoatomic ion transport
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpTPC2 Channels Provisional

Associated Literature (AI-based literature mining, Beta-version)

Two-pore channel type 2 (Mp3g12680); liverwort-type TPC functionally characterized.

1 core 1 peripheral

Hashimoto, K., et al. (2022) · Plant & Cell Physiology  research experimental subject
Two-pore channel type 2 (Mp3g12680); liverwort-type TPC functionally characterized.
Watanabe, K., et al. (2024) · Plant & Cell Physiology  research experimental background
MpTPC2 two-pore channel

Transcript models

Transcript ID Location Sequences Extract region
Mp3g12680.1 chr3:13112782..13121490 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g12680.2 chr3:13112782..13121490 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g12680.3 chr3:13113630..13121329 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g12680 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g12680 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.