Mp3g14390
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SMART | SM00526 | h15plus2 |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PANTHER | PTHR11467 | HISTONE H1 |
| Gene3D | G3DSA:1.10.10.10 | - |
| SUPERFAMILY | SSF46785 | "Winged helix" DNA-binding domain |
| ProSiteProfiles | PS51504 | Linker histone H1/H5 globular (H15) domain profile. |
| Pfam | PF00538 | linker histone H1 and H5 family |
| CDD | cd00073 | H15 |
| KOG | KOG4012 | Histone H1; C-term missing; [B] |
| MapolyID | Mapoly0004s0232 | - |
| GO | GO:0006334 | nucleosome assembly |
| GO | GO:0005634 | nucleus |
| GO | GO:0045910 | negative regulation of DNA recombination |
| GO | GO:0003690 | double-stranded DNA binding |
| GO | GO:0030261 | chromosome condensation |
| GO | GO:0031492 | nucleosomal DNA binding |
| GO | GO:0000786 | nucleosome |
| GO | GO:0003677 | DNA binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPRM | protamine-like protein | Published |
Associated Literature (AI-based literature mining, Beta-version)
MpPRM protamine-like genes are the primary subject, identified from the male gametogenesis transcriptome and characterized by ETD mass spectrometry. The paper shows three H1-related protamine-like precursors are post-translationally cleaved and C-terminally di-aminopropanelated to form mature sperm protamines, expressed mainly in antheridiophores.
3 core 3 peripheral
D'Ippolito, R. A., et al. (2019)
· Journal of Biological Chemisty research experimental subject
MpPRM protamine-like genes are the primary subject, identified from the male gametogenesis transcriptome and characterized by ETD mass spectrometry. The paper shows three H1-related protamine-like precursors are post-translationally cleaved and C-terminally di-aminopropanelated to form mature sperm protamines, expressed mainly in antheridiophores.
Higo, A., et al. (2018)
· Nature Communications research experimental subject
PROTAMINE-LIKE gene encoding an arginine-rich nuclear protein under MpDUO1 control, illustrating rewiring of the downstream network and replacing histone variants seen in flowering plants.
Higo, A., et al. (2016)
· Plant and Cell Physiology research experimental subject
MpPROTAMINE-LIKE; sperm chromatin protein with an arginine-rich C-terminus, identified in a transcriptional framework of male gametogenesis (spermiogenesis) in M. polymorpha.
Wang, M., et al. (2024a)
· Communications Biology research experimental tool
Late-spermiogenesis sperm-specific marker; significantly repressed in Mppgdh mutants in the qRT-PCR sperm-differentiation panel, used as a readout of impaired sperm development.
Iwasaki, M., et al. (2021a)
· Current Biology research experimental tool
Male-specifically expressed gene (Mp3g14390) used as a male marker in expression analyses.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g14390 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g14390.1 GCGGAGGGAG GAAACGCTCC GAAGGATGTT AGGTCCTTCG ACCATGGTGG TGTGTACCAC TTGAGCTCGG GCCGAGTGCG TGCCTCGGCG CGTGCACGAG GAGGAAGGAG TTCATAGGAA AAATTCCGAA AGGCAGAAAA GCCCGAAATT GATCGATCGA TCGATCGATT GATTGATTGA TCGAGAAGGG GAGAGTTTCA AGCATGGCGT CGCCGGGAGA CCTGATGAGC GGGGATCCGT CGGGGTCCAC CAAGGCTAGA GGGAAGGGGC TGCAGCACCC GACGTACGCG AATCTGATCC ACGATGCGAT CTCGAGCTTG AAGCAGCGCG GGGGGTCGAG CGCCATCGCC ATCCGCAAGA GCATTGAGCA GAAGGTGGGA CCCACTCTGG GCCCCAACTA CAAGAAGATT GTGGGCTCGA CGTTGTCGAA ATTGGCCAAG ACCGGAAAGC TCATCAAGAG CGGCAACACG TTCAAGCTGA GCCCCGAGTT CAAGATTGAG CATCTGCGCC GGAGACGCAG ACGCAGACAC CACAAGAAGG GCAAGAAGAA GGGCCGCAGA CGACGACGCA AGAGAAGACG CGGCAGGCGC AGGGCCGGAA CCACCACTTT GACGGCCTCG GGTGGCGTCG CGGTGGCGCG TCGTCGCAGA CGACGGCGCA GGAGAAGACG CAGAAGACGG TCCCGCCGCC GCCGCGGCCG AAAGCACACC ACCCGGTCTA GCTCCGCCCC GGGCATCACT GGCTTGCGTC GCAGACGGCG TCGCAAAAGT CGCAGACGTC GCAGGAGGAG ACGGAGAAGA AGCAAGGGCA GCCGCTCCCC CCGCCGCCGC CACAGCAGCC GATCCAGCGG CGTGAGCCAG AGGAGAGTCC GACATGCTTC GCACGTCCAC ATCCATGGCG GGCACTCGCG AGGCGGATCT CCCGACTCGC CCTCCGGACA TCGATCGCCT CAGCTCTAGT AGACCCGCCC CGCGGTCGAC TTCTCAGACT CTCCGGCCTT TTATGATCAT CAGTCTTCCG CATTCTTCGA AGCCTAGCTA GCTTCTTCGA TCGATCGGCA ACTTTCTAGA GCTTCAATTT TAATCAATCC AACAACAACA AAAATTATTC ATGCATTCCT CCGCCACTCC ACTCCATTCC ATTGGCTGTG CTGGACCATT TCTCTAACCA CCCTCTTCTA GCCTCATTCT CTCATTCATG AAGCTCCATG GAACTCAACA CAACGTCCAA TTTATCTTCT GGCTTGGGTG CTCATCCGAT CGAGCCATTG GTCGAGCTTG ACCGACGTCC AGTCGTCTGC CCCAGTCCTT TATTTATGCC CGTGACCCCC AATAATTATA ACTCAAAAAA CCTCTTTCTG TTTGCCTCTC GGACCAGCCC CGTGGGCCAT ATCCAAGAAG ACCAACTTGT TACATATGGA ATTATATGTA ATAAACTTGG CCCTTCTG |
mRNA UTR + CDS |
| >Mp3g14390.1 GCGGAGGGAG GAAACGCTCC GAAGGATGTT AGGTCCTTCG ACCATGGTGG TGTGTACCAC TTGAGCTCGG GCCGAGTGCG TGCCTCGGCG CGTGCACGAG GAGGAAGGAG TTCATAGGAA AAATTCCGAA AGGCAGAAAA GCCCGAAATT GATCGATCGA TCGATCGATT GATTGATTGA TCGAGAAGGG GAGAGTTTCA AGCATGGCGT CGCCGGGAGA CCTGATGAGC GGGGATCCGT CGGGGTCCAC CAAGGCTAGA GGGAAGGGGC TGCAGCACCC GACGTACGCG AATCTGATCC ACGATGCGAT CTCGAGCTTG AAGCAGCGCG GGGGGTCGAG CGCCATCGCC ATCCGCAAGA GCATTGAGCA GAAGGTGGGA CCCACTCTGG GCCCCAACTA CAAGAAGATT GTGGGCTCGA CGTTGTCGAA ATTGGCCAAG ACCGGAAAGC TCATCAAGAG CGGCAACACG TTCAAGCTGA GCCCCGAGTT CAAGATTGAG CATCTGCGCC GGAGACGCAG ACGCAGACAC CACAAGAAGG GCAAGAAGAA GGGCCGCAGA CGACGACGCA AGAGAAGACG CGGCAGGCGC AGGGCCGGAA CCACCACTTT GACGGCCTCG GGTGGCGTCG CGGTGGCGCG TCGTCGCAGA CGACGGCGCA GGAGAAGACG CAGAAGACGG TCCCGCCGCC GCCGCGGCCG AAAGCACACC ACCCGGTCTA GCTCCGCCCC GGGCATCACT GGCTTGCGTC GCAGACGGCG TCGCAAAAGT CGCAGACGTC GCAGGAGGAG ACGGAGAAGA AGCAAGGGCA GCCGCTCCCC CCGCCGCCGC CACAGCAGCC GATCCAGCGG CGTGAGCCAG AGGAGAGTCC GACATGCTTC GCACGTCCAC ATCCATGGCG GGCACTCGCG AGGCGGATCT CCCGACTCGC CCTCCGGACA TCGATCGCCT CAGCTCTAGT AGACCCGCCC CGCGGTCGAC TTCTCAGACT CTCCGGCCTT TTATGATCAT CAGTCTTCCG CATTCTTCGA AGCCTAGCTA GCTTCTTCGA TCGATCGGCA ACTTTCTAGA GCTTCAATTT TAATCAATCC AACAACAACA AAAATTATTC ATGCATTCCT CCGCCACTCC ACTCCATTCC ATTGGCTGTG CTGGACCATT TCTCTAACCA CCCTCTTCTA GCCTCATTCT CTCATTCATG AAGCTCCATG GAACTCAACA CAACGTCCAA TTTATCTTCT GGCTTGGGTG CTCATCCGAT CGAGCCATTG GTCGAGCTTG ACCGACGTCC AGTCGTCTGC CCCAGTCCTT TATTTATGCC CGTGACCCCC AATAATTATA ACTCAAAAAA CCTCTTTCTG TTTGCCTCTC GGACCAGCCC CGTGGGCCAT ATCCAAGAAG ACCAACTTGT TACATATGGA ATTATATGTA ATAAACTTGG CCCTTCTG |
CDS |
| >Mp3g14390.1 ATGGCGTCGC CGGGAGACCT GATGAGCGGG GATCCGTCGG GGTCCACCAA GGCTAGAGGG AAGGGGCTGC AGCACCCGAC GTACGCGAAT CTGATCCACG ATGCGATCTC GAGCTTGAAG CAGCGCGGGG GGTCGAGCGC CATCGCCATC CGCAAGAGCA TTGAGCAGAA GGTGGGACCC ACTCTGGGCC CCAACTACAA GAAGATTGTG GGCTCGACGT TGTCGAAATT GGCCAAGACC GGAAAGCTCA TCAAGAGCGG CAACACGTTC AAGCTGAGCC CCGAGTTCAA GATTGAGCAT CTGCGCCGGA GACGCAGACG CAGACACCAC AAGAAGGGCA AGAAGAAGGG CCGCAGACGA CGACGCAAGA GAAGACGCGG CAGGCGCAGG GCCGGAACCA CCACTTTGAC GGCCTCGGGT GGCGTCGCGG TGGCGCGTCG TCGCAGACGA CGGCGCAGGA GAAGACGCAG AAGACGGTCC CGCCGCCGCC GCGGCCGAAA GCACACCACC CGGTCTAGCT CCGCCCCGGG CATCACTGGC TTGCGTCGCA GACGGCGTCG CAAAAGTCGC AGACGTCGCA GGAGGAGACG GAGAAGAAGC AAGGGCAGCC GCTCCCCCCG CCGCCGCCAC AGCAGCCGAT CCAGCGGCGT GAGCCAGAGG AGAGTCCGAC ATGCTTCGCA CGTCCACATC CATGGCGGGC ACTCGCGAGG CGGATCTCCC GACTCGCCCT CCGGACATCG ATCGCCTCAG CTCTAG |
Protein |
| >Mp3g14390.1 MASPGDLMSG DPSGSTKARG KGLQHPTYAN LIHDAISSLK QRGGSSAIAI RKSIEQKVGP TLGPNYKKIV GSTLSKLAKT GKLIKSGNTF KLSPEFKIEH LRRRRRRRHH KKGKKKGRRR RRKRRRGRRR AGTTTLTASG GVAVARRRRR RRRRRRRRRS RRRRGRKHTT RSSSAPGITG LRRRRRRKSR RRRRRRRRRS KGSRSPRRRH SSRSSGVSQR RVRHASHVHI HGGHSRGGSP DSPSGHRSPQ L |