Mp3g16270



Description

Annotation

Database ID Description
Gene3D G3DSA:1.25.40.90 -
SUPERFAMILY SSF89009 GAT-like domain
Gene3D G3DSA:1.20.58.150 ANTH domain
ProSiteProfiles PS50942 ENTH domain profile.
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR22951 CLATHRIN ASSEMBLY PROTEIN
SUPERFAMILY SSF48464 ENTH/VHS domain
Pfam PF07651 ANTH domain
SMART SM00273 enth_2
FunFam G3DSA:1.20.58.150:FF:000005 putative clathrin assembly protein At2g25430
CDD cd16987 ANTH_N_AP180_plant
KOG KOG0251 Clathrin assembly protein AP180 and related proteins, contain ENTH domain; [TU]
MapolyID Mapoly0004s0044 -
GO GO:0000149 SNARE binding
GO GO:0072583 clathrin-dependent endocytosis
GO GO:0030276 clathrin binding
GO GO:0005543 phospholipid binding
GO GO:0006900 vesicle budding from membrane
GO GO:0005905 clathrin-coated pit
GO GO:0005546 phosphatidylinositol-4,5-bisphosphate binding
GO GO:0030136 clathrin-coated vesicle
GO GO:0005545 1-phosphatidylinositol binding
GO GO:0048268 clathrin coat assembly
GO GO:0032050 clathrin heavy chain binding

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

ANTH-domain protein (Mp3g16270).

0 core 1 peripheral

Minamino, N., et al. (2024) · Plant & Cell Physiology  research experimental comparator
ANTH-domain protein (Mp3g16270).

Transcript models

Transcript ID Location Sequences Extract region
Mp3g16270.1 chr3:16765928..16769630 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g16270 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g16270 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.