Mp3g17000



Description

Annotation

Database ID Description
Pfam PF00628 PHD-finger
CDD cd15556 PHD_MMD1_like
SMART SM00249 PHD_3
Gene3D G3DSA:3.30.40.10 Zinc/RING finger domain, C3HC4 (zinc finger)
SUPERFAMILY SSF57903 FYVE/PHD zinc finger
ProSitePatterns PS01359 Zinc finger PHD-type signature.
PANTHER PTHR46201 PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED
KEGG K26271 PHD finger protein MS1/MMD1
KOG KOG1844 PHD Zn-finger proteins; [R]
MapolyID Mapoly0039s0094 -

Nomenclature

Gene symbol Product Transcript ID Status
MpGLID PHD-finger transcription factor, ortholog of Arabidopsis thaliana MS1 Published

Associated Literature (AI-based literature mining, Beta-version)

PHD finger protein (Mp3g17000) preferentially expressed early in antheridia; loss-of-function fails to specify sperm cells and overexpression induces ectopic male germline cells. Acts as a master regulator of both male and female germline specification, directly activated by MpBNB via an E-box (CACGTG) in its promoter.

1 core 1 peripheral

Ren, X., et al. (2024) · Plant Cell  research experimental subject
PHD finger protein (Mp3g17000) preferentially expressed early in antheridia; loss-of-function fails to specify sperm cells and overexpression induces ectopic male germline cells. Acts as a master regulator of both male and female germline specification, directly activated by MpBNB via an E-box (CACGTG) in its promoter.
Lozano-Quiles M, Raval PK, Rensing SA, Gould SB. (2026) · Plant Reproduction  research experimental background
Germline identity determinant; strongly upregulated DEG in swi3a/boe-male mutants.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g17000.1 chr3:17865595..17869629 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g17000 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g17000 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.