Mp3g17080



Description

Annotation

Database ID Description
PANTHER PTHR11863 STEROL DESATURASE
Gene3D G3DSA:3.40.50.720 -
SUPERFAMILY SSF51735 NAD(P)-binding Rossmann-fold domains
Pfam PF12076 CER1-like, C-terminal domain
Pfam PF04116 Fatty acid hydroxylase
KEGG K15404 aldehyde decarbonylase [EC:4.1.99.5]
KOG KOG0873 C-4 sterol methyl oxidase; N-term missing; [I]
KOG KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); C-term missing; [Q]
MapolyID Mapoly0039s0086 -
GO GO:0005506 iron ion binding
GO GO:0008610 lipid biosynthetic process
GO GO:0005789 endoplasmic reticulum membrane
GO GO:0016126 sterol biosynthetic process
GO GO:0016491 oxidoreductase activity
GO GO:0000254 C-4 methylsterol oxidase activity

Nomenclature

Gene symbol Product Transcript ID Status
MpCER1 Cuticle related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

UVB-induced DEG, probable alkane wax biosynthetic function (annotation).

0 core 1 peripheral

Clayton, W. A., et al. (2018) · Plant Journal  research experimental background
UVB-induced DEG, probable alkane wax biosynthetic function (annotation).

Transcript models

Transcript ID Location Sequences Extract region
Mp3g17080.1 chr3:18017120..18022758 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g17080 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g17080 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.