Mp3g19510



Description

Annotation

Database ID Description
NCBIfam TIGR01624 LRP1 C-terminal domain
MobiDBLite mobidb-lite consensus disorder prediction
PANTHER PTHR31604 PROTEIN LATERAL ROOT PRIMORDIUM 1
Pfam PF05142 Domain of unknown function (DUF702)
NCBIfam TIGR01623 putative zinc finger domain, LRP1 type
MapolyID Mapoly0049s0083 -
GO GO:0005634 nucleus
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0045893 positive regulation of DNA-templated transcription

Nomenclature

Gene symbol Product Transcript ID Status
MpSHI Auxin related protein Provisional

Associated Literature (AI-based literature mining, Beta-version)

Auxin related protein (from nomenclature)

0 core 5 peripheral

Melissa DÁ, Luis LJ, Eduardo FS, Annie EC, Domingo MÁ, Tom FJ, Jesús LR, Fernando OM, John BL, Mario AA, Cruz-Ramírez A. (2025) · Physiologia plantarum  research citation background
SHI-related gene noted in the MpANT co-expression cluster.
Flores-Sandoval, E., et al. (2015) · PLoS Genetics  other experimental tool
Its promoter (proMpSHI), expressed near the apical cell, was used to drive iaaL for tissue-specific auxin depletion (proMpSHI:iaaL caused irregular zig-zag gemma cup arrangement); MpSHI itself was not functionally characterized.
Lagerkrantz, U., et al. (2020) · Scientific Reports  research experimental tool
Apical-notch-active promoter used to drive iaaL expression (MpSHIpro:iaaL) to deplete auxin locally.
Flores-Sandoval, E., et al. (2018a) · New Phytologist  research experimental background
SHI gene (Mapoly0049s0083); promoter used.
Csicsely, E., et al. (2025) · The Plant Journal  research experimental background
Auxin-related (Mp3g19510); DE in Mpdcl1a.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g19510.1 chr3:21459952..21465911 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g19510 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g19510 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.