Mp3g19720
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF06330 | Trichodiene synthase (TRI5) |
| SUPERFAMILY | SSF48576 | Terpenoid synthases |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase |
| MapolyID | Mapoly0049s0062 | - |
| GO | GO:0016838 | carbon-oxygen lyase activity, acting on phosphates |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpFTPSL8 | Fungal-type terpene synthase-like | Published | |
| MpMTPSL6 | Secondary metabolism enzyme, Terpene biosynthesis enzymes | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Most versatile enzyme of the set, accepting both mono- and sesquiterpene substrates; slightly more active with NPP than GPP and yields cis-beta-ocimene. mRNA 5-10 fold more abundant than other TPS-like contigs.
2 core 0 peripheral
Takizawa, R., et al. (2021a)
· Plant & Cell Physiology 62 528-537 research experimental subject
Fungal-type TPS-like located on chromosome 3 (outside the chr-6 cluster).
Kumar, S., et al. (2016)
· Plant Cell research experimental subject
Most versatile enzyme of the set, accepting both mono- and sesquiterpene substrates; slightly more active with NPP than GPP and yields cis-beta-ocimene. mRNA 5-10 fold more abundant than other TPS-like contigs.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g19720 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g19720.1 AGATCAGTTC TATTGGCAGG AGAGGCATCG GCCAGTCCTG CAGAGACGAT GAAGCCCATC ATGGTGAGCT CTGATTCGGG GGACAATGGG GTCGTCGTCT CCGGAGACAA TTACTTGAGG AAGCTCCGCA ACAGATACTT GAAGTTCCTG GAAGATATGT CTTTCAAGAA CACCAAGGAA GATGCAAGTT ATGAACAGGT CGATGAGATC TACGATGCTG TGTGCAGTCT GCGACAAGTG CAATCATTAC CCGCCGAGGT GATTAGAGCA TGCTGTGCAT ATGCGGACGT CGTATCTAGG TACGATACGT TCGAGAACAA AGTCAAAAAT GCCCATTTTA CCGCTGTGGC TGTGGAGATT GACAATCTGT TGAGCAGTGC TACCATGCGC TCGATGCCTG ATGATGGAGC TCGCATGAAG GAAGACTGTG AATTATTTCA CATCAAGCTC GTCAATCCGG AATTGTACAA GAAACTTCAT CCCACTCGTG GACCTTTGCA TCCTGTTTTC GAGGAAATGA TCGCGATCCT GCAGACGGAC CTCAATCCCT TTTTCCCAAC GCACCCACGA CATCACAAGA CGTTGATCGC CGCAGTTCTG CAATACATTG AAGCGTGTCA ACTTGAGAAC GATTACACAG ACAGTTCGTT CGAGGTCCAG GTTGACATGC CTCGATTTCC TCTATTTCTA CGAGAAAAAT CTGGACTTTC TGAAGGGTTC ATTCTTTTCA TCGTCACTGC GCCTCATCTG GTTCCTGGGA ACTATGCTTC CGAAGATGTA AGTTCAGATC GCATTTTCTT CTACAACAAG GTATATCCGA TGTTCCCGGA GATGTTTGCA GCCTCCGGCC ACATCAACGA TATCATGTCT TTCTACAAGG AGTGCGAGGA GGAGGAAGAT GTAAGCGGAA CGAATTACAT TTCCAGTGTT GCAAAGATTA AGAACATCAC CGCTTTGGAA GCCCTTGATG ATCTCATGAA ACAGGCCGTG GAGATCCGCA AGAATTCGAT GGCTATTGCG GAGAGGAGCG GTTCCATGGA GGTCCAGAGG ACCATTGCTC AGTACTTTCA GGGCCTTATT TCCTGGCACA TTTCTTGGGA AAGGCGTTAT AGGCTTGGGG AGGTACTTGG TGACGATTGG TTCCAAGGTG ATTTCGTTTA ATGCACAAGA CGTTCTCAGA TCTTTTGGAA TGCATCATGT TTGCGTTGAA AGCAGATGCC ACTCGTGTAC GGTAATATGC AGCTCGCAAA TCTCTAGCAG GATGCGTGTT GTTGTAAAGT CGCCAGAGAA TTGTATTCAG TGGCTCTGTA CACTGTACTT GGGATTAATA TAATACTCAC AGCATACTTT TCTCAGTCT |
mRNA UTR + CDS |
| >Mp3g19720.1 AGATCAGTTC TATTGGCAGG AGAGGCATCG GCCAGTCCTG CAGAGACGAT GAAGCCCATC ATGGTGAGCT CTGATTCGGG GGACAATGGG GTCGTCGTCT CCGGAGACAA TTACTTGAGG AAGCTCCGCA ACAGATACTT GAAGTTCCTG GAAGATATGT CTTTCAAGAA CACCAAGGAA GATGCAAGTT ATGAACAGGT CGATGAGATC TACGATGCTG TGTGCAGTCT GCGACAAGTG CAATCATTAC CCGCCGAGGT GATTAGAGCA TGCTGTGCAT ATGCGGACGT CGTATCTAGG TACGATACGT TCGAGAACAA AGTCAAAAAT GCCCATTTTA CCGCTGTGGC TGTGGAGATT GACAATCTGT TGAGCAGTGC TACCATGCGC TCGATGCCTG ATGATGGAGC TCGCATGAAG GAAGACTGTG AATTATTTCA CATCAAGCTC GTCAATCCGG AATTGTACAA GAAACTTCAT CCCACTCGTG GACCTTTGCA TCCTGTTTTC GAGGAAATGA TCGCGATCCT GCAGACGGAC CTCAATCCCT TTTTCCCAAC GCACCCACGA CATCACAAGA CGTTGATCGC CGCAGTTCTG CAATACATTG AAGCGTGTCA ACTTGAGAAC GATTACACAG ACAGTTCGTT CGAGGTCCAG GTTGACATGC CTCGATTTCC TCTATTTCTA CGAGAAAAAT CTGGACTTTC TGAAGGGTTC ATTCTTTTCA TCGTCACTGC GCCTCATCTG GTTCCTGGGA ACTATGCTTC CGAAGATGTA AGTTCAGATC GCATTTTCTT CTACAACAAG GTATATCCGA TGTTCCCGGA GATGTTTGCA GCCTCCGGCC ACATCAACGA TATCATGTCT TTCTACAAGG AGTGCGAGGA GGAGGAAGAT GTAAGCGGAA CGAATTACAT TTCCAGTGTT GCAAAGATTA AGAACATCAC CGCTTTGGAA GCCCTTGATG ATCTCATGAA ACAGGCCGTG GAGATCCGCA AGAATTCGAT GGCTATTGCG GAGAGGAGCG GTTCCATGGA GGTCCAGAGG ACCATTGCTC AGTACTTTCA GGGCCTTATT TCCTGGCACA TTTCTTGGGA AAGGCGTTAT AGGCTTGGGG AGGTACTTGG TGACGATTGG TTCCAAGGTG ATTTCGTTTA ATGCACAAGA CGTTCTCAGA TCTTTTGGAA TGCATCATGT TTGCGTTGAA AGCAGATGCC ACTCGTGTAC GGTAATATGC AGCTCGCAAA TCTCTAGCAG GATGCGTGTT GTTGTAAAGT CGCCAGAGAA TTGTATTCAG TGGCTCTGTA CACTGTACTT GGGATTAATA TAATACTCAC AGCATACTTT TCTCAGTCT |
CDS |
| >Mp3g19720.1 ATGAAGCCCA TCATGGTGAG CTCTGATTCG GGGGACAATG GGGTCGTCGT CTCCGGAGAC AATTACTTGA GGAAGCTCCG CAACAGATAC TTGAAGTTCC TGGAAGATAT GTCTTTCAAG AACACCAAGG AAGATGCAAG TTATGAACAG GTCGATGAGA TCTACGATGC TGTGTGCAGT CTGCGACAAG TGCAATCATT ACCCGCCGAG GTGATTAGAG CATGCTGTGC ATATGCGGAC GTCGTATCTA GGTACGATAC GTTCGAGAAC AAAGTCAAAA ATGCCCATTT TACCGCTGTG GCTGTGGAGA TTGACAATCT GTTGAGCAGT GCTACCATGC GCTCGATGCC TGATGATGGA GCTCGCATGA AGGAAGACTG TGAATTATTT CACATCAAGC TCGTCAATCC GGAATTGTAC AAGAAACTTC ATCCCACTCG TGGACCTTTG CATCCTGTTT TCGAGGAAAT GATCGCGATC CTGCAGACGG ACCTCAATCC CTTTTTCCCA ACGCACCCAC GACATCACAA GACGTTGATC GCCGCAGTTC TGCAATACAT TGAAGCGTGT CAACTTGAGA ACGATTACAC AGACAGTTCG TTCGAGGTCC AGGTTGACAT GCCTCGATTT CCTCTATTTC TACGAGAAAA ATCTGGACTT TCTGAAGGGT TCATTCTTTT CATCGTCACT GCGCCTCATC TGGTTCCTGG GAACTATGCT TCCGAAGATG TAAGTTCAGA TCGCATTTTC TTCTACAACA AGGTATATCC GATGTTCCCG GAGATGTTTG CAGCCTCCGG CCACATCAAC GATATCATGT CTTTCTACAA GGAGTGCGAG GAGGAGGAAG ATGTAAGCGG AACGAATTAC ATTTCCAGTG TTGCAAAGAT TAAGAACATC ACCGCTTTGG AAGCCCTTGA TGATCTCATG AAACAGGCCG TGGAGATCCG CAAGAATTCG ATGGCTATTG CGGAGAGGAG CGGTTCCATG GAGGTCCAGA GGACCATTGC TCAGTACTTT CAGGGCCTTA TTTCCTGGCA CATTTCTTGG GAAAGGCGTT ATAGGCTTGG GGAGGTACTT GGTGACGATT GGTTCCAAGG TGATTTCGTT TAA |
Protein |
| >Mp3g19720.1 MKPIMVSSDS GDNGVVVSGD NYLRKLRNRY LKFLEDMSFK NTKEDASYEQ VDEIYDAVCS LRQVQSLPAE VIRACCAYAD VVSRYDTFEN KVKNAHFTAV AVEIDNLLSS ATMRSMPDDG ARMKEDCELF HIKLVNPELY KKLHPTRGPL HPVFEEMIAI LQTDLNPFFP THPRHHKTLI AAVLQYIEAC QLENDYTDSS FEVQVDMPRF PLFLREKSGL SEGFILFIVT APHLVPGNYA SEDVSSDRIF FYNKVYPMFP EMFAASGHIN DIMSFYKECE EEEDVSGTNY ISSVAKIKNI TALEALDDLM KQAVEIRKNS MAIAERSGSM EVQRTIAQYF QGLISWHISW ERRYRLGEVL GDDWFQGDFV |