Mp3g20070
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF52768 | Arginase/deacetylase |
| FunFam | G3DSA:3.40.800.20:FF:000014 | Histone deacetylase 15 |
| Pfam | PF00850 | Histone deacetylase domain |
| PRINTS | PR01270 | Histone deacetylase superfamily signature |
| PANTHER | PTHR10625 | HISTONE DEACETYLASE HDAC1-RELATED |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain |
| KOG | KOG1343 | Histone deacetylase complex, catalytic component HDA1; N-term missing; [B] |
| MapolyID | Mapoly0049s0028 | - |
| GO | GO:0016575 | obsolete histone deacetylation |
| GO | GO:0000122 | negative regulation of transcription by RNA polymerase II |
| GO | GO:0008134 | transcription factor binding |
| GO | GO:0004407 | histone deacetylase activity |
| GO | GO:0000118 | histone deacetylase complex |
| GO | GO:0005737 | cytoplasm |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpHDAC9 | Chromatin related protein | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g20070 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g20070.1 AAGAAAGGGC GAAAGGTGAA GGGAAAGGAG GAGGATTAGA GCGCCCGAGG AGGAGGAGGA GTTGCGATTT CGATTTGAGC TTTTGCAGAG ATTTGGCCCG CCGACTTCCC GACTGCTGGA TTGCTCGATT GCTCGATTGC TCGTTTGCCG TAGAGTGGAG TGAGTGGAGA GGAGTGGGGC GGAGCGAAGC AGATGTATTT GGGGATGAGG CGGGTGGCTC CTCCGTAGCG CAGGACGGTG TCGTCGATAG AGGCAGGCAG GCAGATACAC CACTTGCTCA AAAGAAGAGG GGAGTGCGGG AGGGCAGGAA AGATCAGGGG TGGCGGAGGA GGAGGAGGAG GAGGAGGAGG AGGTGGTGGA GCTGCAGCGG CTGCCGGGAG GACGATTGGA GGTAAGTGGA AGAGAGTGTG AGTGTGAGGA TTCGAGTCCG ATCGTTTTAA CGAGGAAGAA TCACACTTCA GGCATCGTAG CGAGACCGAG GCGGTAAAGG CGGTGCTCTC GATCCACCCG CCGAACGAGT TTAGGAGGGA AGCTTTTAGA TCGCCTCGAC TCGCCTCGCC CCGCATTGTT GCGCATTGCC GCTCAGGGAG AGCAGCATCG AGGTGCAGGG GAGGGAAGAG CGAGGCGCAA GAGAGGCAGG AAGGGGGAAA TCCCGCAATG GGGCCAGGGG TGGGGCTGGT GTACGACGCG CGCATGTGCG AGCACGCAAA TCTGGAAGAC CCTTATCACC CAGAAAAACC CGAGCGCATT ACCGCCATTT TCGAGATGCT CGAGAAGGCC GGAGTTGTGG AGAAATGCAC GCGCGTGGAC GCCAGGGAGG CGACGGACGC CGAGCTCGCT TCGGTGCACA CGCCGAAGCA CATCGCGGCG ATGCGGGCCG TCGGCAAGCA GGCTTACGAC CGCGAGGAGA GGCTGTCGCT GGGGCGCCGC TACAATTCCA TCTACTTCAA CAAGGGCTCG TCGGGCGCAG CTCTTCTGGC CGCAGGGTCG CTGGTGGAGC TCGCCTCGCG AGTGGCGCGA GGTGAATTGG GCGCCGGCGC CGCCGTCGTG CGGCCTCCCG GGCACCATGC TGAGGCCGAT GCCGCCATGG GCTTCTGCCT CTTCAACAAC GTCGCCGTCG CTGCGCATGT GCTCGTCCAC GGCCAGCCGA GCTCGGGCGT CAAGAAGGTG CTGATCGTCG ACTGGGACGT GCACCACGGG AATGGGACGC AGCACATGTT TTGGCAAGAT CCCCAAGTGC TGTACTTCTC GGTGCACAGG TACGACGATG GGTTCTTCTA CCCAGGCAGC GAGGATGGCG ACTCGGATAA GGTCGGAGGT GGCGCAGGCG CAGGTTTCAA TGTGAACGTG CCCTGGCCCC GCAAGGGATA TGGCGATCTC GACTACCTCG CGGTGTTCGA TCACGTGCTC ATGCCCATCG CCCAAGAATT CCAGGCCGAT CTGGTTCTGG TGTCCGGGGG GTTCGATTCT GCCAAAGGCG ATCCCCTCGG AGGATGTCAG ATTTCCCCAG CAGGCTATAA CCGAATGACG CAGAGGCTGA TGGAGTTGGC CGGAGGGCGC GTCGTGTTAG CTCTGGAAGG TGGCTACAAT CTGAAATCTA TCTCGGAATC GTATCTGGCG TGCATGAAGG CCTTGCTCGG CGAGCCCATG GACGAGTGCG TGTCGGGGGA GAATAGTCTA TTAGCCTCGA CGTGGTCGTT GATTAAGGAG GTTCGGAGTC ATCTGCGGCC TTTCTGGCCT TCGATGTCTA AGGAGGAGGA GGACGACCTC GATAGGGTGC CCGAGTATTT CGTAGTGCAC GACGACCTGG CGCTCATCAG CTCGTCCAGT GACTCAGAGC ACGAATCCGA CGACGATGTC TTCGAGGATT TGGCCGAGTC CTTCGATAGT GAATTGCAAG TGGAGGAAGT CTCCGATGAT TATCTGGACG ACGAAGGCTT GAGACCGGAA GAGGAAACGC GCACGCCTTT GATCGAAGAT CTGATTAACC ATCTCCATTT AAGTGAGGTC AAGGAGGGAG CTCATACGGC TCCAGTCGTC GAGGAGCCAC CGACGCCGGC GGCAGTGTCG GTTCCTGCGC AGAGCCGGAA TTTGTTGGTC CAAGAGATTT CAATTTCGGT ATTAGGCGAA GGTAAGAGCG ACGCAAAGCA AGATCCGTCT GTACCTGTAA TTGTGGAAGT GAATATTGAT ACAAAGCAGA TTGATCCAAA GTGAAAGACA CACGTATATC GAGTCTCCCG GTCAGTGGAA GAGACATGGA AACTCCATCA TTTTGAAGCC CGAGTGCCAT TGTGAGGAAA GATTTTGAGA GCTGCATTTT ATGCTTTCCT CGCAAGAAGC ACATGTACAA ATAGCTCAAG CGGCCATTTA TGAAAGCGAT GTTGCGGCAG CTTGGTGCCC AAGAGTTGCT CTGAGCCTCA TTGATCAGTA AATCTGCCGC ATCAGATTCA GTCGTCGTGT CTAGAAAAGT ACCTGCTTTC TGTACTGGTT CTTTCGACAA AGGATATGGT GCAACACGAG ATGGGGACGA CGGCTCCTCT CCTCTTCTTC AGGCCGAGGC TATGTGTGCA TAGGATTAAA TTACTGAGAC TTTACAAGTC ATGTTGACGA TTCTTCTGAT TCTAGACAAT GTTACTATAT TCAGAGTGAA CCCCGGGCCT CCTCCCTCTT CCTTCACAGT CCAGGACCTA CTTCGTGCAC CTGCGACTTG ACAATCACCA TATGTACTTT GGCGGACAAT CTTCAAATGA ATAATAAACC AAACACTGAA TTAAATACC |
mRNA UTR + CDS |
| >Mp3g20070.1 AAGAAAGGGC GAAAGGTGAA GGGAAAGGAG GAGGATTAGA GCGCCCGAGG AGGAGGAGGA GTTGCGATTT CGATTTGAGC TTTTGCAGAG ATTTGGCCCG CCGACTTCCC GACTGCTGGA TTGCTCGATT GCTCGATTGC TCGTTTGCCG TAGAGTGGAG TGAGTGGAGA GGAGTGGGGC GGAGCGAAGC AGATGTATTT GGGGATGAGG CGGGTGGCTC CTCCGTAGCG CAGGACGGTG TCGTCGATAG AGGCAGGCAG GCAGATACAC CACTTGCTCA AAAGAAGAGG GGAGTGCGGG AGGGCAGGAA AGATCAGGGG TGGCGGAGGA GGAGGAGGAG GAGGAGGAGG AGGTGGTGGA GCTGCAGCGG CTGCCGGGAG GACGATTGGA GGTAAGTGGA AGAGAGTGTG AGTGTGAGGA TTCGAGTCCG ATCGTTTTAA CGAGGAAGAA TCACACTTCA GGCATCGTAG CGAGACCGAG GCGGTAAAGG CGGTGCTCTC GATCCACCCG CCGAACGAGT TTAGGAGGGA AGCTTTTAGA TCGCCTCGAC TCGCCTCGCC CCGCATTGTT GCGCATTGCC GCTCAGGGAG AGCAGCATCG AGGTGCAGGG GAGGGAAGAG CGAGGCGCAA GAGAGGCAGG AAGGGGGAAA TCCCGCAATG GGGCCAGGGG TGGGGCTGGT GTACGACGCG CGCATGTGCG AGCACGCAAA TCTGGAAGAC CCTTATCACC CAGAAAAACC CGAGCGCATT ACCGCCATTT TCGAGATGCT CGAGAAGGCC GGAGTTGTGG AGAAATGCAC GCGCGTGGAC GCCAGGGAGG CGACGGACGC CGAGCTCGCT TCGGTGCACA CGCCGAAGCA CATCGCGGCG ATGCGGGCCG TCGGCAAGCA GGCTTACGAC CGCGAGGAGA GGCTGTCGCT GGGGCGCCGC TACAATTCCA TCTACTTCAA CAAGGGCTCG TCGGGCGCAG CTCTTCTGGC CGCAGGGTCG CTGGTGGAGC TCGCCTCGCG AGTGGCGCGA GGTGAATTGG GCGCCGGCGC CGCCGTCGTG CGGCCTCCCG GGCACCATGC TGAGGCCGAT GCCGCCATGG GCTTCTGCCT CTTCAACAAC GTCGCCGTCG CTGCGCATGT GCTCGTCCAC GGCCAGCCGA GCTCGGGCGT CAAGAAGGTG CTGATCGTCG ACTGGGACGT GCACCACGGG AATGGGACGC AGCACATGTT TTGGCAAGAT CCCCAAGTGC TGTACTTCTC GGTGCACAGG TACGACGATG GGTTCTTCTA CCCAGGCAGC GAGGATGGCG ACTCGGATAA GGTCGGAGGT GGCGCAGGCG CAGGTTTCAA TGTGAACGTG CCCTGGCCCC GCAAGGGATA TGGCGATCTC GACTACCTCG CGGTGTTCGA TCACGTGCTC ATGCCCATCG CCCAAGAATT CCAGGCCGAT CTGGTTCTGG TGTCCGGGGG GTTCGATTCT GCCAAAGGCG ATCCCCTCGG AGGATGTCAG ATTTCCCCAG CAGGCTATAA CCGAATGACG CAGAGGCTGA TGGAGTTGGC CGGAGGGCGC GTCGTGTTAG CTCTGGAAGG TGGCTACAAT CTGAAATCTA TCTCGGAATC GTATCTGGCG TGCATGAAGG CCTTGCTCGG CGAGCCCATG GACGAGTGCG TGTCGGGGGA GAATAGTCTA TTAGCCTCGA CGTGGTCGTT GATTAAGGAG GTTCGGAGTC ATCTGCGGCC TTTCTGGCCT TCGATGTCTA AGGAGGAGGA GGACGACCTC GATAGGGTGC CCGAGTATTT CGTAGTGCAC GACGACCTGG CGCTCATCAG CTCGTCCAGT GACTCAGAGC ACGAATCCGA CGACGATGTC TTCGAGGATT TGGCCGAGTC CTTCGATAGT GAATTGCAAG TGGAGGAAGT CTCCGATGAT TATCTGGACG ACGAAGGCTT GAGACCGGAA GAGGAAACGC GCACGCCTTT GATCGAAGAT CTGATTAACC ATCTCCATTT AAGTGAGGTC AAGGAGGGAG CTCATACGGC TCCAGTCGTC GAGGAGCCAC CGACGCCGGC GGCAGTGTCG GTTCCTGCGC AGAGCCGGAA TTTGTTGGTC CAAGAGATTT CAATTTCGGT ATTAGGCGAA GGTAAGAGCG ACGCAAAGCA AGATCCGTCT GTACCTGTAA TTGTGGAAGT GAATATTGAT ACAAAGCAGA TTGATCCAAA GTGAAAGACA CACGTATATC GAGTCTCCCG GTCAGTGGAA GAGACATGGA AACTCCATCA TTTTGAAGCC CGAGTGCCAT TGTGAGGAAA GATTTTGAGA GCTGCATTTT ATGCTTTCCT CGCAAGAAGC ACATGTACAA ATAGCTCAAG CGGCCATTTA TGAAAGCGAT GTTGCGGCAG CTTGGTGCCC AAGAGTTGCT CTGAGCCTCA TTGATCAGTA AATCTGCCGC ATCAGATTCA GTCGTCGTGT CTAGAAAAGT ACCTGCTTTC TGTACTGGTT CTTTCGACAA AGGATATGGT GCAACACGAG ATGGGGACGA CGGCTCCTCT CCTCTTCTTC AGGCCGAGGC TATGTGTGCA TAGGATTAAA TTACTGAGAC TTTACAAGTC ATGTTGACGA TTCTTCTGAT TCTAGACAAT GTTACTATAT TCAGAGTGAA CCCCGGGCCT CCTCCCTCTT CCTTCACAGT CCAGGACCTA CTTCGTGCAC CTGCGACTTG ACAATCACCA TATGTACTTT GGCGGACAAT CTTCAAATGA ATAATAAACC AAACACTGAA TTAAATACC |
CDS |
| >Mp3g20070.1 ATGGGGCCAG GGGTGGGGCT GGTGTACGAC GCGCGCATGT GCGAGCACGC AAATCTGGAA GACCCTTATC ACCCAGAAAA ACCCGAGCGC ATTACCGCCA TTTTCGAGAT GCTCGAGAAG GCCGGAGTTG TGGAGAAATG CACGCGCGTG GACGCCAGGG AGGCGACGGA CGCCGAGCTC GCTTCGGTGC ACACGCCGAA GCACATCGCG GCGATGCGGG CCGTCGGCAA GCAGGCTTAC GACCGCGAGG AGAGGCTGTC GCTGGGGCGC CGCTACAATT CCATCTACTT CAACAAGGGC TCGTCGGGCG CAGCTCTTCT GGCCGCAGGG TCGCTGGTGG AGCTCGCCTC GCGAGTGGCG CGAGGTGAAT TGGGCGCCGG CGCCGCCGTC GTGCGGCCTC CCGGGCACCA TGCTGAGGCC GATGCCGCCA TGGGCTTCTG CCTCTTCAAC AACGTCGCCG TCGCTGCGCA TGTGCTCGTC CACGGCCAGC CGAGCTCGGG CGTCAAGAAG GTGCTGATCG TCGACTGGGA CGTGCACCAC GGGAATGGGA CGCAGCACAT GTTTTGGCAA GATCCCCAAG TGCTGTACTT CTCGGTGCAC AGGTACGACG ATGGGTTCTT CTACCCAGGC AGCGAGGATG GCGACTCGGA TAAGGTCGGA GGTGGCGCAG GCGCAGGTTT CAATGTGAAC GTGCCCTGGC CCCGCAAGGG ATATGGCGAT CTCGACTACC TCGCGGTGTT CGATCACGTG CTCATGCCCA TCGCCCAAGA ATTCCAGGCC GATCTGGTTC TGGTGTCCGG GGGGTTCGAT TCTGCCAAAG GCGATCCCCT CGGAGGATGT CAGATTTCCC CAGCAGGCTA TAACCGAATG ACGCAGAGGC TGATGGAGTT GGCCGGAGGG CGCGTCGTGT TAGCTCTGGA AGGTGGCTAC AATCTGAAAT CTATCTCGGA ATCGTATCTG GCGTGCATGA AGGCCTTGCT CGGCGAGCCC ATGGACGAGT GCGTGTCGGG GGAGAATAGT CTATTAGCCT CGACGTGGTC GTTGATTAAG GAGGTTCGGA GTCATCTGCG GCCTTTCTGG CCTTCGATGT CTAAGGAGGA GGAGGACGAC CTCGATAGGG TGCCCGAGTA TTTCGTAGTG CACGACGACC TGGCGCTCAT CAGCTCGTCC AGTGACTCAG AGCACGAATC CGACGACGAT GTCTTCGAGG ATTTGGCCGA GTCCTTCGAT AGTGAATTGC AAGTGGAGGA AGTCTCCGAT GATTATCTGG ACGACGAAGG CTTGAGACCG GAAGAGGAAA CGCGCACGCC TTTGATCGAA GATCTGATTA ACCATCTCCA TTTAAGTGAG GTCAAGGAGG GAGCTCATAC GGCTCCAGTC GTCGAGGAGC CACCGACGCC GGCGGCAGTG TCGGTTCCTG CGCAGAGCCG GAATTTGTTG GTCCAAGAGA TTTCAATTTC GGTATTAGGC GAAGGTAAGA GCGACGCAAA GCAAGATCCG TCTGTACCTG TAATTGTGGA AGTGAATATT GATACAAAGC AGATTGATCC AAAGTGA |
Protein |
| >Mp3g20070.1 MGPGVGLVYD ARMCEHANLE DPYHPEKPER ITAIFEMLEK AGVVEKCTRV DAREATDAEL ASVHTPKHIA AMRAVGKQAY DREERLSLGR RYNSIYFNKG SSGAALLAAG SLVELASRVA RGELGAGAAV VRPPGHHAEA DAAMGFCLFN NVAVAAHVLV HGQPSSGVKK VLIVDWDVHH GNGTQHMFWQ DPQVLYFSVH RYDDGFFYPG SEDGDSDKVG GGAGAGFNVN VPWPRKGYGD LDYLAVFDHV LMPIAQEFQA DLVLVSGGFD SAKGDPLGGC QISPAGYNRM TQRLMELAGG RVVLALEGGY NLKSISESYL ACMKALLGEP MDECVSGENS LLASTWSLIK EVRSHLRPFW PSMSKEEEDD LDRVPEYFVV HDDLALISSS SDSEHESDDD VFEDLAESFD SELQVEEVSD DYLDDEGLRP EEETRTPLIE DLINHLHLSE VKEGAHTAPV VEEPPTPAAV SVPAQSRNLL VQEISISVLG EGKSDAKQDP SVPVIVEVNI DTKQIDPK |