Mp3g20100
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Pfam | PF01151 | GNS1/SUR4 family |
| PANTHER | PTHR11157 | FATTY ACID ACYL TRANSFERASE-RELATED |
| KOG | KOG3071 | Fatty acyl-CoA elongase/Polyunsaturated fatty acid specific elongation enzyme; [I] |
| MapolyID | Mapoly0049s0025 | - |
| GO | GO:0019367 | fatty acid elongation, saturated fatty acid |
| GO | GO:0030148 | sphingolipid biosynthetic process |
| GO | GO:0030176 | obsolete integral component of endoplasmic reticulum membrane |
| GO | GO:0034626 | fatty acid elongation, polyunsaturated fatty acid |
| GO | GO:0009922 | fatty acid elongase activity |
| GO | GO:0042761 | very long-chain fatty acid biosynthetic process |
| GO | GO:0034625 | fatty acid elongation, monounsaturated fatty acid |
| GO | GO:0016020 | membrane |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpELO2 | delta5-fatty acid elongase | Published |
Associated Literature (AI-based literature mining, Beta-version)
ELO-like fatty-acid elongase isolated from Marchantia; heterologous yeast expression demonstrated Delta-5-elongase activity elongating C20 PUFAs (20:4, 20:5) toward C22 VLCPUFA.
1 core 0 peripheral
Kajikawa M, Yamato KT, Sakai Y, Fukuzawa H, Ohyama K, Kohchi T. (2006)
· FEBS Lett research experimental subject
ELO-like fatty-acid elongase isolated from Marchantia; heterologous yeast expression demonstrated Delta-5-elongase activity elongating C20 PUFAs (20:4, 20:5) toward C22 VLCPUFA.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g20100 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g20100.1 CCAGGAGCAG CAGAAGGGGA GAGATTGGGA GCGGCTCTGG TTTATTACCG GGGAGTGGTC CTTTCCCTCT CCCTCTATCG TATATACAAA TTTATGAACG TGTGAACTCG TCGCGGAGGC CAGAATTCGA GGCAATGTGA GGCACGGACG GGCCGACGAC GAACGACCTG TGGCAGCCGC TGCTGCTGCC GCTGCTCTCG GCGCGAGCGA GCGAGCAAGA ACGCATCGGG CGGTAATGGC GACGAAGAGC GGGAGCGGAT TGCTCGAGTG GATAGCAGTA GCGGCGAAGA TGAAGCAAGC TCGGAGCAGC CCCGAGGGTG AGATCGTGGG TGGGAATAGG ATGGGCTCTG GAAACGGAGC TGAGTGGACC ACGAGTCTGA TTCATGCATT TTTGAATGCC ACGAATGGGA AGAGCGGCGG TGCTTCGAAA GTGAGGCCTC TCGAGGAGAG AATCGGGGAG GCGGTGTTCA GAGTTCTTGA AGATGTCGTG GGCGTGGATA TTAGGAAGCC GAATCCTGTC ACGAAGGACC TTCCGATGGT CGAGAGTCCC GTGCCCGTGT TGGCCTGCAT TTCTCTGTAC TTGCTCGTGG TGTGGCTTTG GTCTTCTCAC ATTAAGGCGT CTGGCCAAAA GCCCAGGAAG GAGGACCCGC TCGCCCTGCG TTGCCTTGTG ATTGCCCACA ATCTGTTCCT GTGTTGCTTG AGCTTGTTCA TGTGCGTCGG TCTCATTGCC GCAGCTCGAC ATTACGGGTG AGTCCTTGTA CGGTAGTGAA TATCCCACGC AATGATTCGG TTATATGAGC ATGATCCAGA CCTTTCAACG TTTGCTGTCC ACTGTGCTCT CGCGGTCCTC TGACCACGAG AGAAGCGAAA TCCCTGTCAA GGTGGAGGCA TTTGAGTACC AATACCGGGA TTTGTGGGCC TCTTCCGCAA GCGCAAGGCT TGTTCCTCTC ATTCAGTGAA GGCTCGGAGG CTGAGCGATA ATGAAGCCAT ATAGTCGGAT TGACTTAAGC ATCCTTTTCG TTTTATCGTT TTATTACTAA GCTCGATGAA CTTTTGCATG TGGAGTGGTG GCCAGAGAGT AGAGCTTTGC ATTGTGGATT TCGTTCACGT GGTATCCTGA ACGGTTCAGT TTGGTTGAGA TACTCGTTAC CGTCGTTAGC TCTTTGAGGA ACACGGGAAT CATAATAGCT GTACGTGTCA CTGAGCACTG TCCATTTGCT CGTGAAATCT GACATTTATT TTTCTCTCTG CGTTACAGGT ATAGTGTATG GGGGAACTAC TACAGAGAAA GAGAACCCGC AGTGAGTTAG GGGTTTAAGC CCCATGATGA TCTTTCTGGT TTCTCTGGTT GATTCACCTG AAATTTTGGT ATGATTGTGG TCATGTACGT GTGCCATACC TCGTGCAAGT ATGAAAGATC AAACAACTTC CCACATAATT TGACTGTTCG CGAAAATAAT TGCTGTTGCG GATGAATTTC TTACGTGGCA ACTGTATCTT CTCACAGATG AATTTGCTCA TTTACGTGTT CTACATGTCG AAGCTGTACG AATTTATGGA CACGGTACGT GACTAACTTA AGTGATTTGT GTGTCTTCTC CAATTTTCTG AGCTTTATTG TACTTTTTAC ACTGAATTTG GCAATCGTGT GAACTTTATA CTTAGTCCAA GTCGCTGTTC CCACAGGCCA TTATGTTATT CAGAAGAAAT CTGCGACAAG TCACGTACTT GCATGTATAT CACCACGCAA GCATCGCAAT GATTTGGTGG ATAATTTGCT ATCGGTTTCC AGGAGCTGAT TGTAAGTACA TTCGATACTG TATATTTGGA TGGGCGTTTT ATGAAGAAAT TCTTGTCGTC TCGTCACTTG GGCAGCCCTG GTGACACTGA TGTTTTGGTT TCACAGCGTA TTTCTCCGCA GCATTCAATT CCTGTATCCA TGTAGCGATG TACCTGTATT ATCTACTCGC GGCAACCGTC GCCAGAGACG AAAAGCGGAG ACGCAAATAT CTCTTCTGGG GAAAGTATGT TCTGCACTGC GAAGTCTTGC TGTAATTGAA GTAAATTGTA TTCATCTTGT TCCCTGGTAG CGTATTCATG TGTTTAGCCG TCTGCTGTCT TGCATTTAAA ATATTTTATA ATATTTGCGT GACTAAAGAA CGCTCGAATT TCAAGTTTAA GGTTCCTGCC TGACACCGGC GTCGGCGTCA CTGCAGGTAT CTGACCATCA TACAAATGCT TCAGTTTTTG TCCTTCATTG GGCAGGCGAT TTATGCAATG TGGAAGTTTG AATACTATCC CAAGGGCTTT GGCAGGGTGA GAACTTTTTA CCCTTTTTGC ATCACTATTG TTTGAGGTGC TTGAATACGA GCTTTTTGAA TGACCAAACC CGTTGAGGAA TAAATCAAGT GTGCAGTTAA TTACAGTTTG CGGCTTCTGA CTATTTGTGG CTTCTAAGAA TGAAACGCAG GTGAGGTTCT GATGGTCAGG TATTGACCTC TGTGTGACGG TCTTGCAGAT GTTGTTCTTT TACTCTGTAT CATTGTTGGC ATTTTTCGGC AACTTCTTTG TCAAAAAGTA TTCGAACGCT TCACAGCCTA AGACAGTTAA AGTGGAGTGA GCCAACCATT ATTTGTACTC ACTTGTAGGT TAGCGAATTT TCATGAGTGG GGCATGATAG CGATTAGGCT TCGATCCAAG GGAGTCTTGT TGATTACATT GTATATCAGC TTGACCATCG ACACTTATGT TCGTCACGTG TATCATTAGG GTCCAACTAT TCGGGTTAAA CCACATTCAA AATAGAAATT CATATTCTGA TAGAGAATCT ATATCGTCTC GGATCGTGTA CAAAGTACGA GGTGGGATGG CCTCCATGTT TATTAAAGAG ACCTTATACA GCTTCTTATC AACAACGTGA GACGGAGTTT TCGG |
mRNA UTR + CDS |
| >Mp3g20100.1 CCAGGAGCAG CAGAAGGGGA GAGATTGGGA GCGGCTCTGG TTTATTACCG GGGAGTGGTC CTTTCCCTCT CCCTCTATCG TATATACAAA TTTATGAACG TGTGAACTCG TCGCGGAGGC CAGAATTCGA GGCAATGTGA GGCACGGACG GGCCGACGAC GAACGACCTG TGGCAGCCGC TGCTGCTGCC GCTGCTCTCG GCGCGAGCGA GCGAGCAAGA ACGCATCGGG CGGTAATGGC GACGAAGAGC GGGAGCGGAT TGCTCGAGTG GATAGCAGTA GCGGCGAAGA TGAAGCAAGC TCGGAGCAGC CCCGAGGGTG AGATCGTGGG TGGGAATAGG ATGGGCTCTG GAAACGGAGC TGAGTGGACC ACGAGTCTGA TTCATGCATT TTTGAATGCC ACGAATGGGA AGAGCGGCGG TGCTTCGAAA GTGAGGCCTC TCGAGGAGAG AATCGGGGAG GCGGTGTTCA GAGTTCTTGA AGATGTCGTG GGCGTGGATA TTAGGAAGCC GAATCCTGTC ACGAAGGACC TTCCGATGGT CGAGAGTCCC GTGCCCGTGT TGGCCTGCAT TTCTCTGTAC TTGCTCGTGG TGTGGCTTTG GTCTTCTCAC ATTAAGGCGT CTGGCCAAAA GCCCAGGAAG GAGGACCCGC TCGCCCTGCG TTGCCTTGTG ATTGCCCACA ATCTGTTCCT GTGTTGCTTG AGCTTGTTCA TGTGCGTCGG TCTCATTGCC GCAGCTCGAC ATTACGGGTA TAGTGTATGG GGGAACTACT ACAGAGAAAG AGAACCCGCA ATGAATTTGC TCATTTACGT GTTCTACATG TCGAAGCTGT ACGAATTTAT GGACACGGCC ATTATGTTAT TCAGAAGAAA TCTGCGACAA GTCACGTACT TGCATGTATA TCACCACGCA AGCATCGCAA TGATTTGGTG GATAATTTGC TATCGGTTTC CAGGAGCTGA TTCGTATTTC TCCGCAGCAT TCAATTCCTG TATCCATGTA GCGATGTACC TGTATTATCT ACTCGCGGCA ACCGTCGCCA GAGACGAAAA GCGGAGACGC AAATATCTCT TCTGGGGAAA GTATCTGACC ATCATACAAA TGCTTCAGTT TTTGTCCTTC ATTGGGCAGG CGATTTATGC AATGTGGAAG TTTGAATACT ATCCCAAGGG CTTTGGCAGG ATGTTGTTCT TTTACTCTGT ATCATTGTTG GCATTTTTCG GCAACTTCTT TGTCAAAAAG TATTCGAACG CTTCACAGCC TAAGACAGTT AAAGTGGAGT GAGCCAACCA TTATTTGTAC TCACTTGTAG GTTAGCGAAT TTTCATGAGT GGGGCATGAT AGCGATTAGG CTTCGATCCA AGGGAGTCTT GTTGATTACA TTGTATATCA GCTTGACCAT CGACACTTAT GTTCGTCACG TGTATCATTA GGGTCCAACT ATTCGGGTTA AACCACATTC AAAATAGAAA TTCATATTCT GATAGAGAAT CTATATCGTC TCGGATCGTG TACAAAGTAC GAGGTGGGAT GGCCTCCATG TTTATTAAAG AGACCTTATA CAGCTTCTTA TCAACAACGT GAGACGGAGT TTTCGG |
CDS |
| >Mp3g20100.1 ATGGCGACGA AGAGCGGGAG CGGATTGCTC GAGTGGATAG CAGTAGCGGC GAAGATGAAG CAAGCTCGGA GCAGCCCCGA GGGTGAGATC GTGGGTGGGA ATAGGATGGG CTCTGGAAAC GGAGCTGAGT GGACCACGAG TCTGATTCAT GCATTTTTGA ATGCCACGAA TGGGAAGAGC GGCGGTGCTT CGAAAGTGAG GCCTCTCGAG GAGAGAATCG GGGAGGCGGT GTTCAGAGTT CTTGAAGATG TCGTGGGCGT GGATATTAGG AAGCCGAATC CTGTCACGAA GGACCTTCCG ATGGTCGAGA GTCCCGTGCC CGTGTTGGCC TGCATTTCTC TGTACTTGCT CGTGGTGTGG CTTTGGTCTT CTCACATTAA GGCGTCTGGC CAAAAGCCCA GGAAGGAGGA CCCGCTCGCC CTGCGTTGCC TTGTGATTGC CCACAATCTG TTCCTGTGTT GCTTGAGCTT GTTCATGTGC GTCGGTCTCA TTGCCGCAGC TCGACATTAC GGGTATAGTG TATGGGGGAA CTACTACAGA GAAAGAGAAC CCGCAATGAA TTTGCTCATT TACGTGTTCT ACATGTCGAA GCTGTACGAA TTTATGGACA CGGCCATTAT GTTATTCAGA AGAAATCTGC GACAAGTCAC GTACTTGCAT GTATATCACC ACGCAAGCAT CGCAATGATT TGGTGGATAA TTTGCTATCG GTTTCCAGGA GCTGATTCGT ATTTCTCCGC AGCATTCAAT TCCTGTATCC ATGTAGCGAT GTACCTGTAT TATCTACTCG CGGCAACCGT CGCCAGAGAC GAAAAGCGGA GACGCAAATA TCTCTTCTGG GGAAAGTATC TGACCATCAT ACAAATGCTT CAGTTTTTGT CCTTCATTGG GCAGGCGATT TATGCAATGT GGAAGTTTGA ATACTATCCC AAGGGCTTTG GCAGGATGTT GTTCTTTTAC TCTGTATCAT TGTTGGCATT TTTCGGCAAC TTCTTTGTCA AAAAGTATTC GAACGCTTCA CAGCCTAAGA CAGTTAAAGT GGAGTGA |
Protein |
| >Mp3g20100.1 MATKSGSGLL EWIAVAAKMK QARSSPEGEI VGGNRMGSGN GAEWTTSLIH AFLNATNGKS GGASKVRPLE ERIGEAVFRV LEDVVGVDIR KPNPVTKDLP MVESPVPVLA CISLYLLVVW LWSSHIKASG QKPRKEDPLA LRCLVIAHNL FLCCLSLFMC VGLIAAARHY GYSVWGNYYR EREPAMNLLI YVFYMSKLYE FMDTAIMLFR RNLRQVTYLH VYHHASIAMI WWIICYRFPG ADSYFSAAFN SCIHVAMYLY YLLAATVARD EKRRRKYLFW GKYLTIIQML QFLSFIGQAI YAMWKFEYYP KGFGRMLFFY SVSLLAFFGN FFVKKYSNAS QPKTVKVE |