Mp3g21160



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Coils Coil Coil
PANTHER PTHR31908 PROTEIN CROWDED NUCLEI 4
KOG KOG0161 Myosin class II heavy chain; N-term missing; [Z]
KOG KOG3740 Uncharacterized conserved protein; N-term missing; [S]
MapolyID Mapoly0160s0011 -
GO GO:0005634 nucleus
GO GO:0006997 nucleus organization

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Main subject: a liverwort nuclear matrix constituent protein localized to the nuclear periphery. A CRISPR/Cas9 loss-of-function mutant showed reduced growth and curly thallus lobes but no altered nuclear morphology. A repetitive region on the male sex chromosome was decondensed in the mutant, and NMCPs are implicated in stress-response modulation.

1 core 1 peripheral

Wang, N., et al. (2021b) · Frontiers in Plant Science  research experimental subject
Main subject: a liverwort nuclear matrix constituent protein localized to the nuclear periphery. A CRISPR/Cas9 loss-of-function mutant showed reduced growth and curly thallus lobes but no altered nuclear morphology. A repetitive region on the male sex chromosome was decondensed in the mutant, and NMCPs are implicated in stress-response modulation.
Melkonian, K., et al. (2022a) · New Phytologist  research experimental background
Nuclear-matrix-constituent protein (Mp3g21160); miniTurbo-identified SNARE-proximal protein.

Transcript models

Transcript ID Location Sequences Extract region
Mp3g21160.1 chr3:23450448..23459371 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g21160 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g21160 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.