Mp3g23830
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:2.40.480.10 | - |
| PANTHER | PTHR21495 | NUCLEOPORIN-RELATED |
| Pfam | PF03018 | Dirigent-like protein |
| MapolyID | Mapoly0121s0040 | - |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpDIR49 | Secondary metabolism enzyme | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Secondary metabolism enzyme (from nomenclature)
0 core 1 peripheral
Kobayashi, H., et al. (2023)
· Frontiers in Plant Science research sequence background
Locus ID for MpSGF6, listed in the candidate peptide gene table.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp3g23830 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp3g23830.1 CGCTCAGCAC TTGTGATAGC AATCGACAGT GCGAGCCGAC GGCTGCTCTC CTCGCCTTCG TCATTCTGAA GTTTCATCAG ACCACAATTT TCCTCATATC AGAGGTTCAT TATGGAGAGA CTCACGATAT GCTGGAGTCT CGTTCTTCTG ATCTCTTTGA TAGGGATTTT CCAGTCAGAG GCGAGCAACC TTGGCCTCAA GAAGTCTATC AATCTTACGT ACTACGTCCA CGACACATTT GTTAAAGGAT CTGAGACCTC TGTCGTTGTT GCAACCGTTG GAGAAAACAA GGGAGATCCT GCCTTCGGAG ATATCAGAGT ATTCCACAGC CCGATAAGGG CGACAGAGGA CAGAAACTCG CTCCTGCTCG GGAACACGGG TGGAACTCTC GCTGATATAT CGCATTTGGA AAATAACACA TATCACGCGT CTTTCTCGGT CTCGTATAAC TCTTCGGAAT ACGTCGGCAC CTTCAGTGTC CAAGGACGAG TTACTCCCGG CACAACGACG TGGGAAGTAC CGATCATCGC TGGAACGGGT GATTTTCGTG GTGCTCAAGG CTATGGCATT GCGAAAGCTT ACAATGTCAC CGATATCAGT GACGTCCTAT TCAAGTACGA TGTTTTCTTG AACGTTGAAG TCGCTGATAG TTACTCTAGA GCTCAGCAGA CGATGTAGAC TGGCGTCCTG ATGTTGAAAC CTTCTCTTTC TGAGAACTCG AGGACATCTT CTCAAGTAGA ATAAGACGAG CTGCGAGCAA GTGCAGAGTG CAATGTTGAA GTTTTTAGTA CGAATAATGT TGGTTGTAGG AGCTGCGGCT CGGGGCAGTT GCTCGAGAAC AATGCTACTG ACGATTGCTC GCAGTTGCGA AGACCTCTAT GAGATCGTAG TATTATCATC CCATACCCTC AGAATTCAGT CCTGCGTGTC AGTAACTCAT TGCTGTTTTT CATAGTTTTA CGGCATTGAA ATTCTGCAAC CTGAGATCTT AGCTGACTCT TCTGGTCATA TAATGTAAAT ATGAGAGCTT TTGCACTCGG TCAGATCTCG TAGTATTTTT CCTTGCAAAA ATGTTTTTC |
mRNA UTR + CDS |
| >Mp3g23830.1 CGCTCAGCAC TTGTGATAGC AATCGACAGT GCGAGCCGAC GGCTGCTCTC CTCGCCTTCG TCATTCTGAA GTTTCATCAG ACCACAATTT TCCTCATATC AGAGGTTCAT TATGGAGAGA CTCACGATAT GCTGGAGTCT CGTTCTTCTG ATCTCTTTGA TAGGGATTTT CCAGTCAGAG GCGAGCAACC TTGGCCTCAA GAAGTCTATC AATCTTACGT ACTACGTCCA CGACACATTT GTTAAAGGAT CTGAGACCTC TGTCGTTGTT GCAACCGTTG GAGAAAACAA GGGAGATCCT GCCTTCGGAG ATATCAGAGT ATTCCACAGC CCGATAAGGG CGACAGAGGA CAGAAACTCG CTCCTGCTCG GGAACACGGG TGGAACTCTC GCTGATATAT CGCATTTGGA AAATAACACA TATCACGCGT CTTTCTCGGT CTCGTATAAC TCTTCGGAAT ACGTCGGCAC CTTCAGTGTC CAAGGACGAG TTACTCCCGG CACAACGACG TGGGAAGTAC CGATCATCGC TGGAACGGGT GATTTTCGTG GTGCTCAAGG CTATGGCATT GCGAAAGCTT ACAATGTCAC CGATATCAGT GACGTCCTAT TCAAGTACGA TGTTTTCTTG AACGTTGAAG TCGCTGATAG TTACTCTAGA GCTCAGCAGA CGATGTAGAC TGGCGTCCTG ATGTTGAAAC CTTCTCTTTC TGAGAACTCG AGGACATCTT CTCAAGTAGA ATAAGACGAG CTGCGAGCAA GTGCAGAGTG CAATGTTGAA GTTTTTAGTA CGAATAATGT TGGTTGTAGG AGCTGCGGCT CGGGGCAGTT GCTCGAGAAC AATGCTACTG ACGATTGCTC GCAGTTGCGA AGACCTCTAT GAGATCGTAG TATTATCATC CCATACCCTC AGAATTCAGT CCTGCGTGTC AGTAACTCAT TGCTGTTTTT CATAGTTTTA CGGCATTGAA ATTCTGCAAC CTGAGATCTT AGCTGACTCT TCTGGTCATA TAATGTAAAT ATGAGAGCTT TTGCACTCGG TCAGATCTCG TAGTATTTTT CCTTGCAAAA ATGTTTTTC |
CDS |
| >Mp3g23830.1 ATGGAGAGAC TCACGATATG CTGGAGTCTC GTTCTTCTGA TCTCTTTGAT AGGGATTTTC CAGTCAGAGG CGAGCAACCT TGGCCTCAAG AAGTCTATCA ATCTTACGTA CTACGTCCAC GACACATTTG TTAAAGGATC TGAGACCTCT GTCGTTGTTG CAACCGTTGG AGAAAACAAG GGAGATCCTG CCTTCGGAGA TATCAGAGTA TTCCACAGCC CGATAAGGGC GACAGAGGAC AGAAACTCGC TCCTGCTCGG GAACACGGGT GGAACTCTCG CTGATATATC GCATTTGGAA AATAACACAT ATCACGCGTC TTTCTCGGTC TCGTATAACT CTTCGGAATA CGTCGGCACC TTCAGTGTCC AAGGACGAGT TACTCCCGGC ACAACGACGT GGGAAGTACC GATCATCGCT GGAACGGGTG ATTTTCGTGG TGCTCAAGGC TATGGCATTG CGAAAGCTTA CAATGTCACC GATATCAGTG ACGTCCTATT CAAGTACGAT GTTTTCTTGA ACGTTGAAGT CGCTGATAGT TACTCTAGAG CTCAGCAGAC GATGTAG |
Protein |
| >Mp3g23830.1 MERLTICWSL VLLISLIGIF QSEASNLGLK KSINLTYYVH DTFVKGSETS VVVATVGENK GDPAFGDIRV FHSPIRATED RNSLLLGNTG GTLADISHLE NNTYHASFSV SYNSSEYVGT FSVQGRVTPG TTTWEVPIIA GTGDFRGAQG YGIAKAYNVT DISDVLFKYD VFLNVEVADS YSRAQQTM |