Mp3g25250



Description

Annotation

Database ID Description
SMART SM00176 ran_sub_2
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00174 rho_sub_3
Gene3D G3DSA:3.40.50.300 -
PRINTS PR00449 Transforming protein P21 ras signature
PANTHER PTHR47979 DRAB11-RELATED
SMART SM00173 ras_sub_4
ProSiteProfiles PS51421 small GTPase Ras family profile.
SMART SM00175 rab_sub_5
FunFam G3DSA:3.40.50.300:FF:001447 Ras-related protein Rab-1B
Pfam PF15305 Intraflagellar transport protein 43
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
ProSiteProfiles PS51419 small GTPase Rab1 family profile.
Pfam PF00071 Ras family
NCBIfam TIGR00231 small GTP-binding protein domain
KEGG K19675 intraflagellar transport protein 43
KOG KOG0098 GTPase Rab2, small G protein superfamily; [U]
MapolyID Mapoly0100s0038 -
GO GO:0003924 GTPase activity
GO GO:0016192 vesicle-mediated transport
GO GO:0005794 Golgi apparatus
GO GO:0005525 GTP binding
GO GO:0030991 intraciliary transport particle A

Nomenclature

Gene symbol Product Transcript ID Status
MpRAB2B RAB GTPase Published

Associated Literature (AI-based literature mining, Beta-version)

RAB GTPase with a C-terminal intraflagellar-transport-like sequence; specifically expressed (genome-wide RAB GTPase analysis of subcellular localization/expression).

1 core 0 peripheral

Minamino, N., et al. (2018) · Plant and Cell Physiology  research experimental subject
RAB GTPase with a C-terminal intraflagellar-transport-like sequence; specifically expressed (genome-wide RAB GTPase analysis of subcellular localization/expression).

Transcript models

Transcript ID Location Sequences Extract region
Mp3g25250.1 chr3:28710467..28724316 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp3g25250.2 chr3:28710467..28723804 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp3g25250 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp3g25250 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.