Mp4g01260



Description

Annotation

Database ID Description
PANTHER PTHR10543 BETA-CAROTENE DIOXYGENASE
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF03055 Retinal pigment epithelial membrane protein
KOG KOG1285 Beta, beta-carotene 15,15'-dioxygenase and related enzymes; [Q]
MapolyID Mapoly0066s0017 -
GO GO:0010436 carotenoid dioxygenase activity
GO GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen
GO GO:0009570 chloroplast stroma
GO GO:0016121 carotene catabolic process

Nomenclature

No gene symbols are registered for this gene.

Associated Literature (AI-based literature mining, Beta-version)

Beta-carotene dioxygenase; up DEG.

0 core 1 peripheral

Jibran, R., et al. (2024b) · Frontiers in Plant Science  research experimental background
Beta-carotene dioxygenase; up DEG.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g01260.1 chr4:1447003..1453526 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g01260.2 chr4:1446986..1453526 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g01260 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g01260 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.