Mp4g01560



Description

Annotation

Database ID Description
PANTHER PTHR31499 MYB FAMILY TRANSCRIPTION FACTOR PHL11
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF46689 Homeodomain-like
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
Pfam PF00249 Myb-like DNA-binding domain
Gene3D G3DSA:1.10.10.60 -
Pfam PF14379 MYB-CC type transfactor, LHEQLE motif
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
FunFam G3DSA:1.10.10.60:FF:000002 Myb family transcription factor
MapolyID Mapoly0098s0044 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP3 transcription factor, GARP Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, GARP (from nomenclature)

0 core 1 peripheral

Rico-Reséndiz, F., et al. (2020) · International Journal of Molecular Sciences  research sequence comparator
PHR family member identified phylogenetically, placed in a different subclade from MpPHR1 and not up-regulated under Pi stress.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g01560.1 chr4:1920822..1927974 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g01560 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g01560 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.