Mp4g03420
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF52047 | RNI-like |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| Pfam | PF12937 | F-box-like |
| SMART | SM00367 | LRR_CC_2 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor |
| PANTHER | PTHR38926 | F-BOX DOMAIN CONTAINING PROTEIN, EXPRESSED |
| KOG | KOG1947 | Leucine rich repeat proteins, some proteins contain F-box; N-term missing; [R] |
| MapolyID | Mapoly0044s0131 | - |
| GO | GO:0005515 | protein binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpFBW2 | F-BOX | Provisional |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g03420 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g03420.1 CCTCGTTCCG TACGAAGGCG AGGTCAAGAG GAAAGTAGAC AAGTGGACAG GAGCCGCGGC AGCATCTTTC ACACTCGTCC TCGAACGAGC ACCTCGTCCA GAGTTCATCT GTGTCTTGCT GTGTGTCTCT GTGTGTGAGT GAACTGTTGG ATGTGCGTGT AGAGTTAGAG AAAGGGCGGG GTGCCGGGAC GAGGACGGGA TAGCGCGCTC AAGTGGCGCA GGAAGTATAT TTGGGTTGTA CGAGGTATCG CGAGCGGAGG AGGGAACTCT AGATGTGGTT TTGTTGTAAC TGAGTTTGAA CGAGGAGAGG AGAGGAGAGA AATCTATGGA CAGGACTTTT GTGGAGGAGG AGGAGGAGGA GGAGCTTTCC GACTCCGAGA ATGAGCAGGC GAACGTCCGG TGGGCGGAGA TGTTGCCCGA GACTCTCGTC GAAGTGATGA GGAGGTTGCC TTCGAGGGAA CTTCTGCAGA CTGTACCTCA AGTTTGTAAA GCTTGGAGAA AGGCTTCGCT GGATCCTGCC TGCTGGCAGG TTGTCGATCT CAAAGACTGG TGCATTTCGG CCGGGGGAGG TGAAATTGTC GATCGCATGG TGAAATTGGT TGTGTCTCGG AGCTGTGGTG GGATTCGGGA GCTGCGTGTG ACGAATTTGG ACAGCGATGC CAGTTTGCAC TATCTCGCGC AGAGGTATGT CTATTTCTTG GTTACCAGTT CTTTGAACAT GAATGGCTCT GTGCACTTCG TCCTTTTCGT TAAAACTCGA ATGTTTATTT GTACCATAAT TACCCAGTTA TATCTTCGCT GAAATAGCAT TCTTGTTTTA GGGATTGAAA GCTCTTGCAG TCTCTCAATT ACCTTTATTC AAAGAACTGC GTTTTCTCTG CCAAAACCTT AGAAACCACT TCTTTTATGT CGACTCCAGA TTAGTGGGAG CTGGAACGAA GCTGGACAAT GTTTTATTGT GCAAAATTTG CAAGATTTTT ATAAAGCTGC TTAAGATTTA TACAAGATTT GAAAGAACGG AACACTTCGA TCTTTTACTC GTGTATGATC ACTTATACGA TCGATAATGA AGTTTGTCAT CATTTTGCTT TTCTTATGTT TGTATTGGGA CCAACAAATA GCTCTCCTTA GTATATGTGA AGTGTTTACT TTTTGTATGG TACTATCCAC ATATTGTCTT AAGAATGTGC GATAACCAAA TTGAGTGCGT ACACCATCGA ACACTGGAGC ATGCTGTACT TATTTTTTTT TCGTGGTACA AATTGGTGTT CACAGTCGTC TGAGTTCGTT GAGGACGCTC TGCATTCCTT CCTCGAAGAT AACTGAGGCT GGCCTTTGTG AACTCATTTT GACCTTGCCT TCACTTGTGC ATCTAGACAT AAGCAAGTGT AGCGCAATAA AATGTAAAGC GTTGGAAGTT ATTGGTCAGA CCTGCGAGTC ACTCATCAGA CTTGACAGAA GCATGTGGGC TTTGAATCTG GCAACTATGG GACCTAGCGA TGACTCGGAA GCCCTGGCCA TTGCACATAA CATGCCCAAG CTTAAACATC TGGAGATGGT ATCAGGTTTG TTGACTAACG CAGGCCTGAT CGCCATCCTG GATAAGTGTC CTGATTTGGA GTACCTGGAT GTTAGTCGTT GCTGGAACGT GAAGTATGGG TGTACCATGT CTTCAAAATG CCAGAAAGTG CGCCAGTTCA TCGGAGGGAA CACAGAAGGA TCTGACTATG ATTACGATGA AGACGATGAC GACAATGCGG AAGAATGGGA CTACAGAACT GAGTTTTTCG AGGACTTCGA GTATCTTGAA TCCTATATCG AAGATGAATT TTCCTTGTTT GATCTTTAGA TGCAGGTCTC ACGGAAGGGA TATGACATGT CAGTAATGTA ATTTCGAGAT TATCTTTCTC TCCTCATTTA TATTTTTTTC CCCAGGATCT CACAGGATGT GGTAGACGCA TGTCCCCATC CTCAGGCAGT GAAAGAATCC ATCAGTCATT AGGAGAATAG CAGAAAACTG AGCGGTCCTT CATGACACCT ACGTAGCAAA GAGCTAGCAT TTCTGTGTAC ACGTCGGATT GAGTCTCGCC CCGCAGACTA ATTGTTCGTA CTTCATGAAC CTGTTACCAG GAAAAGTGGT CGTATATATG TTCGGTGAGA AATCTCTTAT TCTGATAATT TTGTAAGCCT GGGACTATCG TTTCTTAAGC TTTCCTCCAT ACTAATTTTA TCACTCA |
mRNA UTR + CDS |
| >Mp4g03420.1 CCTCGTTCCG TACGAAGGCG AGGTCAAGAG GAAAGTAGAC AAGTGGACAG GAGCCGCGGC AGCATCTTTC ACACTCGTCC TCGAACGAGC ACCTCGTCCA GAGTTCATCT GTGTCTTGCT GTGTGTCTCT GTGTGTGAGT GAACTGTTGG ATGTGCGTGT AGAGTTAGAG AAAGGGCGGG GTGCCGGGAC GAGGACGGGA TAGCGCGCTC AAGTGGCGCA GGAAGTATAT TTGGGTTGTA CGAGGTATCG CGAGCGGAGG AGGGAACTCT AGATGTGGTT TTGTTGTAAC TGAGTTTGAA CGAGGAGAGG AGAGGAGAGA AATCTATGGA CAGGACTTTT GTGGAGGAGG AGGAGGAGGA GGAGCTTTCC GACTCCGAGA ATGAGCAGGC GAACGTCCGG TGGGCGGAGA TGTTGCCCGA GACTCTCGTC GAAGTGATGA GGAGGTTGCC TTCGAGGGAA CTTCTGCAGA CTGTACCTCA AGTTTGTAAA GCTTGGAGAA AGGCTTCGCT GGATCCTGCC TGCTGGCAGG TTGTCGATCT CAAAGACTGG TGCATTTCGG CCGGGGGAGG TGAAATTGTC GATCGCATGG TGAAATTGGT TGTGTCTCGG AGCTGTGGTG GGATTCGGGA GCTGCGTGTG ACGAATTTGG ACAGCGATGC CAGTTTGCAC TATCTCGCGC AGAGTCGTCT GAGTTCGTTG AGGACGCTCT GCATTCCTTC CTCGAAGATA ACTGAGGCTG GCCTTTGTGA ACTCATTTTG ACCTTGCCTT CACTTGTGCA TCTAGACATA AGCAAGTGTA GCGCAATAAA ATGTAAAGCG TTGGAAGTTA TTGGTCAGAC CTGCGAGTCA CTCATCAGAC TTGACAGAAG CATGTGGGCT TTGAATCTGG CAACTATGGG ACCTAGCGAT GACTCGGAAG CCCTGGCCAT TGCACATAAC ATGCCCAAGC TTAAACATCT GGAGATGGTA TCAGGTTTGT TGACTAACGC AGGCCTGATC GCCATCCTGG ATAAGTGTCC TGATTTGGAG TACCTGGATG TTAGTCGTTG CTGGAACGTG AAGTATGGGT GTACCATGTC TTCAAAATGC CAGAAAGTGC GCCAGTTCAT CGGAGGGAAC ACAGAAGGAT CTGACTATGA TTACGATGAA GACGATGACG ACAATGCGGA AGAATGGGAC TACAGAACTG AGTTTTTCGA GGACTTCGAG TATCTTGAAT CCTATATCGA AGATGAATTT TCCTTGTTTG ATCTTTAGAT GCAGGTCTCA CGGAAGGGAT ATGACATGTC AGTAATGTAA TTTCGAGATT ATCTTTCTCT CCTCATTTAT ATTTTTTTCC CCAGGATCTC ACAGGATGTG GTAGACGCAT GTCCCCATCC TCAGGCAGTG AAAGAATCCA TCAGTCATTA GGAGAATAGC AGAAAACTGA GCGGTCCTTC ATGACACCTA CGTAGCAAAG AGCTAGCATT TCTGTGTACA CGTCGGATTG AGTCTCGCCC CGCAGACTAA TTGTTCGTAC TTCATGAACC TGTTACCAGG AAAAGTGGTC GTATATATGT TCGGTGAGAA ATCTCTTATT CTGATAATTT TGTAAGCCTG GGACTATCGT TTCTTAAGCT TTCCTCCATA CTAATTTTAT CACTCA |
CDS |
| >Mp4g03420.1 ATGGACAGGA CTTTTGTGGA GGAGGAGGAG GAGGAGGAGC TTTCCGACTC CGAGAATGAG CAGGCGAACG TCCGGTGGGC GGAGATGTTG CCCGAGACTC TCGTCGAAGT GATGAGGAGG TTGCCTTCGA GGGAACTTCT GCAGACTGTA CCTCAAGTTT GTAAAGCTTG GAGAAAGGCT TCGCTGGATC CTGCCTGCTG GCAGGTTGTC GATCTCAAAG ACTGGTGCAT TTCGGCCGGG GGAGGTGAAA TTGTCGATCG CATGGTGAAA TTGGTTGTGT CTCGGAGCTG TGGTGGGATT CGGGAGCTGC GTGTGACGAA TTTGGACAGC GATGCCAGTT TGCACTATCT CGCGCAGAGT CGTCTGAGTT CGTTGAGGAC GCTCTGCATT CCTTCCTCGA AGATAACTGA GGCTGGCCTT TGTGAACTCA TTTTGACCTT GCCTTCACTT GTGCATCTAG ACATAAGCAA GTGTAGCGCA ATAAAATGTA AAGCGTTGGA AGTTATTGGT CAGACCTGCG AGTCACTCAT CAGACTTGAC AGAAGCATGT GGGCTTTGAA TCTGGCAACT ATGGGACCTA GCGATGACTC GGAAGCCCTG GCCATTGCAC ATAACATGCC CAAGCTTAAA CATCTGGAGA TGGTATCAGG TTTGTTGACT AACGCAGGCC TGATCGCCAT CCTGGATAAG TGTCCTGATT TGGAGTACCT GGATGTTAGT CGTTGCTGGA ACGTGAAGTA TGGGTGTACC ATGTCTTCAA AATGCCAGAA AGTGCGCCAG TTCATCGGAG GGAACACAGA AGGATCTGAC TATGATTACG ATGAAGACGA TGACGACAAT GCGGAAGAAT GGGACTACAG AACTGAGTTT TTCGAGGACT TCGAGTATCT TGAATCCTAT ATCGAAGATG AATTTTCCTT GTTTGATCTT TAG |
Protein |
| >Mp4g03420.1 MDRTFVEEEE EEELSDSENE QANVRWAEML PETLVEVMRR LPSRELLQTV PQVCKAWRKA SLDPACWQVV DLKDWCISAG GGEIVDRMVK LVVSRSCGGI RELRVTNLDS DASLHYLAQS RLSSLRTLCI PSSKITEAGL CELILTLPSL VHLDISKCSA IKCKALEVIG QTCESLIRLD RSMWALNLAT MGPSDDSEAL AIAHNMPKLK HLEMVSGLLT NAGLIAILDK CPDLEYLDVS RCWNVKYGCT MSSKCQKVRQ FIGGNTEGSD YDYDEDDDDN AEEWDYRTEF FEDFEYLESY IEDEFSLFDL |