Mp4g06020
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit |
| FunFam | G3DSA:3.30.190.10:FF:000001 | Ribulose bisphosphate carboxylase small chain, chloroplastic |
| CDD | cd03527 | RuBisCO_small |
| SUPERFAMILY | SSF55239 | RuBisCO, small subunit |
| PRINTS | PR00152 | RuBisCO small subunit signature |
| PANTHER | PTHR31262 | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC |
| Pfam | PF00101 | Ribulose bisphosphate carboxylase, small chain |
| Hamap | MF_00859 | Ribulose bisphosphate carboxylase small subunit [cbbS]. |
| SMART | SM00961 | RuBisCO_small_2_a |
| KEGG | K01602 | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] |
| MapolyID | Mapoly0114s0052 | - |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis RBCS genes; Citrine fused with the amino terminal sequence of MpRBCS is transferred to chloroplasts. Some paralogous genes are encoded in the genome. (from nomenclature)
1 core 0 peripheral
Li, T., et al. (2021b)
· Cells research experimental subject
Putative ribulose-bisphosphate carboxylase small subunit gene involved in carbon fixation; expression altered in Mpcry mutants.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g06020 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g06020.1 ATGACTGAGG AAGCTCCGTT GTTCTTACGC TACATCCAAA ATGCATCACA AGAGCTCCAT CCTCAAACCT GTGGCTCCCT CATCTTCTAT CCGCGGGACT TCCTACTACA TAAGCCCGAC GAGCTTCCAT TCCTGCAGAA TCTCGAGTAC CTGTACACTC TCTCTCTCTC TCACAGCGCA TCTTGCCTCG AAGCCTTTCC AGCCCTTGCT GCAGAAATGG CCTCAGTCGT TGCATCGTCC GCCGTGGTGA CCCCTGTTGC AGCTCTCGCT GCTTCCAGCT CCACCAAGAG CTCAGATGTC ATCTCTGTGA AGGCCGGACT CAAGGCTGGC GTCTTCGGAG GCAAGAGCGA ATGGCAATCC AAGACCGCAA CCAACGGCAG CAGAGTGTCA TGCATGCAGG TAATTATGGA TTGGACTTTA GTAGTGAGGT AGAGAGCAAT GCGCACGATC TCTTTGGGAT TGTACAGTGA ATTTTCGTGG AATGAAGAAG TGCTTCCGCC TCGTTCTGTT TCTGATTTCC TGAGGCGTTG CGAATGGCAG GTGTGGGAGC CATACAACAA CCTGAGGTTC GAGACCCTGT CCTACTTGCC CGCTCTGAGC CAGGATGCTC TGGCCAAGCA GATCGACTAC GTCATCAAGT CTGGCTGGGC TCCCTGCATT GAGTTCGACA CCGTAAGTTC TTCATCATAT TAGTTCTTCA TTTCGACATT TTCTTTGCGT CTGTTAGTGC TGGACCGCGA AGTGTATGCG TAAGTTTTGA AGATGCGATC ACCTCGAGGG GCGTGGTTTT TACCGGTCCT GTTGTCATTG TGTGTTCTAC AGCAAGGAGC CGTGACCCGT GAGGGAAGCA GAATGCCCGG ATACTACGAT GGTCGCTACT GGACCATGTG GAAGCTGCCC ATGTTCGGAT GCACTGACTC TGCTTCAGTG TTGAGGGAGA TCGAGGAATG CAAGAAGTTG TACGGACACA AGTGCTACAT CAGGTGCTTG GGATTCGACA ACACCAGGCA GGTGCAATGC GCCATGTTCA TCGTCCACCA GCCCACCAAC AAGTAGATCA TCGTATGCTC TCTCAGGGCA CTACAAATTA GCCGACTTGA AAGCTTTCCA TGCAATGCGC TATGTTTATC GTCCACCAGC CCACCCAGTG AATTAAGGTT GGCAGCGTGC TAACAGAGTT AAAAGCCTGA GGATGAATCT CGACGATCAT ATCCGCGGGC ATAATTTAAC TCAAAACGGG CGGCAAGACA CGACCAGGTT TATGATAGCT CTAGAGCCAG GAATGTAGAG GAAAGGAGTC CCAAACTCCT TTGTTTTCAC TGTGTAATCC TCATGTATGC TCTGCACAGA CAGAGTTTGT ACCATTTTTT TCTGAATAAA TGTTCG |
mRNA UTR + CDS |
| >Mp4g06020.1 ATGACTGAGG AAGCTCCGTT GTTCTTACGC TACATCCAAA ATGCATCACA AGAGCTCCAT CCTCAAACCT GTGGCTCCCT CATCTTCTAT CCGCGGGACT TCCTACTACA TAAGCCCGAC GAGCTTCCAT TCCTGCAGAA TCTCGAGTAC CTGTACACTC TCTCTCTCTC TCACAGCGCA TCTTGCCTCG AAGCCTTTCC AGCCCTTGCT GCAGAAATGG CCTCAGTCGT TGCATCGTCC GCCGTGGTGA CCCCTGTTGC AGCTCTCGCT GCTTCCAGCT CCACCAAGAG CTCAGATGTC ATCTCTGTGA AGGCCGGACT CAAGGCTGGC GTCTTCGGAG GCAAGAGCGA ATGGCAATCC AAGACCGCAA CCAACGGCAG CAGAGTGTCA TGCATGCAGG TGTGGGAGCC ATACAACAAC CTGAGGTTCG AGACCCTGTC CTACTTGCCC GCTCTGAGCC AGGATGCTCT GGCCAAGCAG ATCGACTACG TCATCAAGTC TGGCTGGGCT CCCTGCATTG AGTTCGACAC CCAAGGAGCC GTGACCCGTG AGGGAAGCAG AATGCCCGGA TACTACGATG GTCGCTACTG GACCATGTGG AAGCTGCCCA TGTTCGGATG CACTGACTCT GCTTCAGTGT TGAGGGAGAT CGAGGAATGC AAGAAGTTGT ACGGACACAA GTGCTACATC AGGTGCTTGG GATTCGACAA CACCAGGCAG GTGCAATGCG CCATGTTCAT CGTCCACCAG CCCACCAACA AGTAGATCAT CGTATGCTCT CTCAGGGCAC TACAAATTAG CCGACTTGAA AGCTTTCCAT GCAATGCGCT ATGTTTATCG TCCACCAGCC CACCCAGTGA ATTAAGGTTG GCAGCGTGCT AACAGAGTTA AAAGCCTGAG GATGAATCTC GACGATCATA TCCGCGGGCA TAATTTAACT CAAAACGGGC GGCAAGACAC GACCAGGTTT ATGATAGCTC TAGAGCCAGG AATGTAGAGG AAAGGAGTCC CAAACTCCTT TGTTTTCACT GTGTAATCCT CATGTATGCT CTGCACAGAC AGAGTTTGTA CCATTTTTTT CTGAATAAAT GTTCG |
CDS |
| >Mp4g06020.1 ATGGCCTCAG TCGTTGCATC GTCCGCCGTG GTGACCCCTG TTGCAGCTCT CGCTGCTTCC AGCTCCACCA AGAGCTCAGA TGTCATCTCT GTGAAGGCCG GACTCAAGGC TGGCGTCTTC GGAGGCAAGA GCGAATGGCA ATCCAAGACC GCAACCAACG GCAGCAGAGT GTCATGCATG CAGGTGTGGG AGCCATACAA CAACCTGAGG TTCGAGACCC TGTCCTACTT GCCCGCTCTG AGCCAGGATG CTCTGGCCAA GCAGATCGAC TACGTCATCA AGTCTGGCTG GGCTCCCTGC ATTGAGTTCG ACACCCAAGG AGCCGTGACC CGTGAGGGAA GCAGAATGCC CGGATACTAC GATGGTCGCT ACTGGACCAT GTGGAAGCTG CCCATGTTCG GATGCACTGA CTCTGCTTCA GTGTTGAGGG AGATCGAGGA ATGCAAGAAG TTGTACGGAC ACAAGTGCTA CATCAGGTGC TTGGGATTCG ACAACACCAG GCAGGTGCAA TGCGCCATGT TCATCGTCCA CCAGCCCACC AACAAGTAG |
Protein |
| >Mp4g06020.1 MASVVASSAV VTPVAALAAS SSTKSSDVIS VKAGLKAGVF GGKSEWQSKT ATNGSRVSCM QVWEPYNNLR FETLSYLPAL SQDALAKQID YVIKSGWAPC IEFDTQGAVT REGSRMPGYY DGRYWTMWKL PMFGCTDSAS VLREIEECKK LYGHKCYIRC LGFDNTRQVQ CAMFIVHQPT NK |