Mp4g06030
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:3.30.190.10 | Ribulose bisphosphate carboxylase, small subunit |
| FunFam | G3DSA:3.30.190.10:FF:000001 | Ribulose bisphosphate carboxylase small chain, chloroplastic |
| PANTHER | PTHR31262 | RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1, CHLOROPLASTIC |
| CDD | cd03527 | RuBisCO_small |
| PRINTS | PR00152 | RuBisCO small subunit signature |
| SUPERFAMILY | SSF55239 | RuBisCO, small subunit |
| Pfam | PF00101 | Ribulose bisphosphate carboxylase, small chain |
| Hamap | MF_00859 | Ribulose bisphosphate carboxylase small subunit [cbbS]. |
| SMART | SM00961 | RuBisCO_small_2_a |
| KEGG | K01602 | ribulose-bisphosphate carboxylase small chain [EC:4.1.1.39] |
| MapolyID | Mapoly0114s0051 | - |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of Arabidopsis RBCS genes; Citrine fused with the amino terminal sequence of MpRBCS is transferred to chloroplasts. Some paralogous genes are encoded in the genome. (from nomenclature)
1 core 0 peripheral
Li, T., et al. (2021b)
· Cells research experimental subject
Putative ribulose-bisphosphate carboxylase small subunit gene involved in carbon fixation; expression altered in Mpcry mutants.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g06030 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g06030.1 CTTCCAGTAT TGCAGTCACA TCTCTTCATC ATTCATCTCA CTGCTCGTTC TCGAGCTCCA GCCTTCACAA TGGCTTCCGT CGTTGCATCT TCTGCCATTG TGACCCCGGT CTCAGCCCTC GCTGCCTCCT CCACCACTAG GAGCTCTGAG ATTGTGTCCG TCAAGGCTGG TCTCAAGGCC GGAGTTTTGG GCGGAAAGAC CGAATGGCAA TCCAAGACCC AAACCAATGG TAGCCGTGTG TCCTGCATGC AGGTATGACT GCGTTCACAA CTGATTGCGA GGTTAAGGGA AGTGTGCGAT GTTTTCAGGT CGCTGTGTAT ATGTGGAATG TCGGTGAATG GTTGAACTCG CCTGGCTGGA ATTTCTCCAT CTGGTGATTC TCGAGTCGCG GCTACCCTAA TTACTCGTGA TTGATGTGTC CGCTCAGGTG TGGGAGCCAT ACAACAACCT GAGGTTCGAG ACCCTGTCCT ACTTGCCCGC TCTGAGCCAG GATGCTCTGG CCAAGCAGAT CGACTACGTC ATCAAGTCCG GCTGGGCTCC CTGCATTGAG TTCGACACCG TAAGTTCTTC ATCAAATTAG TTCTTCATTT GAACATTTTC TTTGCGTCTG TTAGTGCAGG ACCGCGAAGT GTATGCATAA GTTTTGAAGA TGAGATCACC CCGAGGGCGT GTTTTTTACC GGTCCTGTTT TCATTGTCTG TTCTACAGCA AGGAGCCGTG ACCCGTGAGG GAAGCAGAAT GCCCGGATAC TACGATGGTC GCTACTGGAC CATGTGGAAG CTGCCCATGT TCGGATGCAC CGACTCTGCT TCAGTGTTGA GGGAGATCGA GGAATGCAAG AAGTTGTACG GACACAAGTG CTACATCAGG TGCTTGGGAT TCGACAACAC CAGGCAGGTG CAATGCGCCA TGTTCATCGT CCACCAACCC ACCAACAAGT AGATCACCGT ATGCTCTCTC AGGGCACTAC AAATTAGCCG ACTTGAAAGT TTTCATTGCA GTGCGCTGTA TTCATCGTCC ACCAGTCCAA CCAGGAAGTG AAGGTCGGCT GCGTGCTAAC AGAGGTAAAA TGAGGATGAA TTTCGACGAT CATATCCGCG GGCTTAGTTT AACTCACGAC TGTAGGCGAG CACGACAAGG ATTTAGAATT GCTCTAGAGC CAGGAATGTA GAGTAATGGA GTCTCCTAAT CTCTCTTTCT CAATGTGTTA TCGTCAATTG CTCTGTAGGG ACAGAGTTTG TACCATTTTT TTCTCAATAA ATGTTCGGAC ATTCTTCATT |
mRNA UTR + CDS |
| >Mp4g06030.1 CTTCCAGTAT TGCAGTCACA TCTCTTCATC ATTCATCTCA CTGCTCGTTC TCGAGCTCCA GCCTTCACAA TGGCTTCCGT CGTTGCATCT TCTGCCATTG TGACCCCGGT CTCAGCCCTC GCTGCCTCCT CCACCACTAG GAGCTCTGAG ATTGTGTCCG TCAAGGCTGG TCTCAAGGCC GGAGTTTTGG GCGGAAAGAC CGAATGGCAA TCCAAGACCC AAACCAATGG TAGCCGTGTG TCCTGCATGC AGGTGTGGGA GCCATACAAC AACCTGAGGT TCGAGACCCT GTCCTACTTG CCCGCTCTGA GCCAGGATGC TCTGGCCAAG CAGATCGACT ACGTCATCAA GTCCGGCTGG GCTCCCTGCA TTGAGTTCGA CACCCAAGGA GCCGTGACCC GTGAGGGAAG CAGAATGCCC GGATACTACG ATGGTCGCTA CTGGACCATG TGGAAGCTGC CCATGTTCGG ATGCACCGAC TCTGCTTCAG TGTTGAGGGA GATCGAGGAA TGCAAGAAGT TGTACGGACA CAAGTGCTAC ATCAGGTGCT TGGGATTCGA CAACACCAGG CAGGTGCAAT GCGCCATGTT CATCGTCCAC CAACCCACCA ACAAGTAGAT CACCGTATGC TCTCTCAGGG CACTACAAAT TAGCCGACTT GAAAGTTTTC ATTGCAGTGC GCTGTATTCA TCGTCCACCA GTCCAACCAG GAAGTGAAGG TCGGCTGCGT GCTAACAGAG GTAAAATGAG GATGAATTTC GACGATCATA TCCGCGGGCT TAGTTTAACT CACGACTGTA GGCGAGCACG ACAAGGATTT AGAATTGCTC TAGAGCCAGG AATGTAGAGT AATGGAGTCT CCTAATCTCT CTTTCTCAAT GTGTTATCGT CAATTGCTCT GTAGGGACAG AGTTTGTACC ATTTTTTTCT CAATAAATGT TCGGACATTC TTCATT |
CDS |
| >Mp4g06030.1 ATGGCTTCCG TCGTTGCATC TTCTGCCATT GTGACCCCGG TCTCAGCCCT CGCTGCCTCC TCCACCACTA GGAGCTCTGA GATTGTGTCC GTCAAGGCTG GTCTCAAGGC CGGAGTTTTG GGCGGAAAGA CCGAATGGCA ATCCAAGACC CAAACCAATG GTAGCCGTGT GTCCTGCATG CAGGTGTGGG AGCCATACAA CAACCTGAGG TTCGAGACCC TGTCCTACTT GCCCGCTCTG AGCCAGGATG CTCTGGCCAA GCAGATCGAC TACGTCATCA AGTCCGGCTG GGCTCCCTGC ATTGAGTTCG ACACCCAAGG AGCCGTGACC CGTGAGGGAA GCAGAATGCC CGGATACTAC GATGGTCGCT ACTGGACCAT GTGGAAGCTG CCCATGTTCG GATGCACCGA CTCTGCTTCA GTGTTGAGGG AGATCGAGGA ATGCAAGAAG TTGTACGGAC ACAAGTGCTA CATCAGGTGC TTGGGATTCG ACAACACCAG GCAGGTGCAA TGCGCCATGT TCATCGTCCA CCAACCCACC AACAAGTAG |
Protein |
| >Mp4g06030.1 MASVVASSAI VTPVSALAAS STTRSSEIVS VKAGLKAGVL GGKTEWQSKT QTNGSRVSCM QVWEPYNNLR FETLSYLPAL SQDALAKQID YVIKSGWAPC IEFDTQGAVT REGSRMPGYY DGRYWTMWKL PMFGCTDSAS VLREIEECKK LYGHKCYIRC LGFDNTRQVQ CAMFIVHQPT NK |