Mp4g06790



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:2.60.40.3440 -
SUPERFAMILY SSF81296 E set domains
ProSiteProfiles PS50194 Filamin/ABP280 repeat profile.
Pfam PF17963 Bacterial Ig domain
Gene3D G3DSA:2.60.40.10 Immunoglobulins
KOG KOG0518 Actin-binding cytoskeleton protein, filamin; N-term missing; C-term missing; [Z]
MapolyID Mapoly0125s0024 -

Nomenclature

Gene symbol Product Transcript ID Status
MpGEX2 gamete expressed 2 Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of AtGEX2 involved in gamete attachment; not controlled by MpDUO1 and evolved prior to DUO1 in ancestors of plants, algae, and animals, indicating independent regulatory evolution.

1 core 0 peripheral

Higo, A., et al. (2018) · Nature Communications  research experimental subject
Ortholog of AtGEX2 involved in gamete attachment; not controlled by MpDUO1 and evolved prior to DUO1 in ancestors of plants, algae, and animals, indicating independent regulatory evolution.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g06790.1 chr4:9073290..9086300 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g06790 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g06790 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.