Mp4g08700



Description

Annotation

Database ID Description
Gene3D G3DSA:1.10.10.60 -
FunFam G3DSA:1.10.10.60:FF:000002 Myb family transcription factor
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
SUPERFAMILY SSF46689 Homeodomain-like
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00249 Myb-like DNA-binding domain
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
PANTHER PTHR31314 MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE
MapolyID Mapoly0157s0009 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP2 transcription factor, GARP Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, GARP (from nomenclature)

0 core 2 peripheral

Sakai Y, Takami H, Yamaoka S, Kato H, Fukaki H, Kohchi T, Ishizaki K. (2025) · The New phytologist  research experimental background
Downregulated DEG in MpSTG-induction transcriptome analysis.
Csicsely, E., et al. (2025) · The Plant Journal  research experimental background
GARP2 (Mp4g08700); down, miRNA target (validated).

Transcript models

Transcript ID Location Sequences Extract region
Mp4g08700.1 chr4:11092545..11099524 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g08700 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g08700 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.