Mp4g10900
Description
Annotation
| Database | ID | Description |
|---|---|---|
| SUPERFAMILY | SSF103511 | Chlorophyll a-b binding protein |
| Gene3D | G3DSA:1.10.3460.10 | Chlorophyll a/b binding protein domain |
| FunFam | G3DSA:1.10.3460.10:FF:000007 | Chlorophyll a-b binding protein, chloroplastic |
| PANTHER | PTHR21649 | CHLOROPHYLL A/B BINDING PROTEIN |
| Pfam | PF00504 | Chlorophyll A-B binding protein |
| KEGG | K08916 | light-harvesting complex II chlorophyll a/b binding protein 5 |
| MapolyID | Mapoly0011s0076 | - |
| GO | GO:0009768 | photosynthesis, light harvesting in photosystem I |
| GO | GO:0009941 | chloroplast envelope |
| GO | GO:0010287 | plastoglobule |
| GO | GO:0009535 | chloroplast thylakoid membrane |
| GO | GO:0009416 | response to light stimulus |
| GO | GO:0016020 | membrane |
| GO | GO:0009765 | photosynthesis, light harvesting |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
Ortholog of light-harvesting complex chlorophyll a/b binding protein (Mp4g10900); qRT-PCR showed significantly reduced expression in Mpcry mutants, linking MpCRY to photosynthesis-related gene regulation.
1 core 0 peripheral
Li, T., et al. (2021b)
· Cells research experimental subject
Ortholog of light-harvesting complex chlorophyll a/b binding protein (Mp4g10900); qRT-PCR showed significantly reduced expression in Mpcry mutants, linking MpCRY to photosynthesis-related gene regulation.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g10900 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g10900.1 CGAGCAGCTC TTCTTCCAAT TTCTTCTCGC TCGATCCAGG GATCGTAGCA AGCAGCAGAG CAGGGTCGAG CAGCAGCAGT GCAGCCGCAG GTCGAGGGCG AGAGCTTCGC GAAGCTTTCT GTAGAGTGAG GAGAAATGGC GGCAATGGCA GGAACCGCAG CCGTGCTCGG AAGGTCCGAG ATCCTGGGAC AGGGCCTCGT CGCCTCGTCC TCCACCTCCG TCAGGACCTC GTCCCCGTTC CAGGTCGTGG CCCTCTTCAA CAAGAAGGGT GCTGCTCCCA AGAAGGCCGC TGGCAAGGTC GCCAAGACCG CACCACCCTC CAACGCCGAG TTGGCCAAGT GGTATGGTGA GTAATTTCCG ACTGGTCTGG GTCCTCGAAA TTTCTTTTTC CTGGCGTTGG ATTACTAGGC CAAGAAAGGT TGACGCGAGG TGGAATCGGG CGATTGCGGG AAACGCAAGC TGAAGTGTGG ATTTCATGTC AGCAAGCCTT GTAGAGCTTT TCATTTTAAA ATGGGAATAC CCTCGAGCGT GACGTTAGGC GCTGCGTGCG GAGTTCCTTA GTCTGCCTGC GACAGCAAGG GTAGTCATTT TCGAGGGTCA CAGATGCTCG ATCCACAATC GCAATGTCTG CGCAAAACTT GTTGCTGATT AGTGTGACAA TTTTTTTCCA GGCCCTGACA GGAGAATCTA CTTGCCCGAG GGTCTTTTGG ACAAGTCTGA TATCCCCGCG TACTTGACGG GTGAGGTTCC CGGAGATTAC GGATTCGACC CCTTCGGTCT CTCCAAGAAG CCCGCCGACT TCGACAAGTA CCAGGCCTAC GAGCTCATCC ACGCCCGTTG GGCCATGCTC GGAGCAGCTG GATTCGTCCT CCCCGAGGCC TTCAACAAGT ACGGTGCCGT CTGCGGGCCC GAGGCTGTGT GGTTCAAGGT GAACATCGAC ACTCAACTTG CACATATGTT GCACCACTTA CCTTTCAAAC AACTGTCATC CAGAATATTT CGTTGTACTA ACATTTTTCT CGCAACAGAC CGGAGCTCTT CTGCTCGAAG GAAACACCCT TCAATACTTC GGTGCCAGCA TCCCAGTGAA CCTAGCTGCC GCTGTCATCG CCGAGGTCAT CCTCGTCGGA GGTGCCGAGT ACTACCGATC CACCAACAAG TCCCCACTCG GATCTGTAAG TGAATCATCA CAGTCAAAGT TGTCTCGAGC AGGTTGTCAT TGCTCACCTT CCACCTGAAA TTCGATGTTG ACAATCGTGT GTGCCGTGCA GGACCTCGAC CGCCTCCACC CCGGTGGCGC ATTCGACCCC TTGGGTCTAG CTAAGGACCC CGACCAGTTC GCCTTGTTGA AGGTGAAGGA GATCAAGAAC GGACGACTGG CCATGTTCTC CATGCTCGGA TTCTTCATCC AGGCGTACGT GACCGGCGAG GGCCCCGTCG AGAACTTGGC CGCTCACTTG AGCGATCCGT TCGGAAACAA TTTGCTGACA GTTCTGCAAG GAAGCGCCGA GCGCGTTCCT AGCCTGTAGA CTACAGATCA GATCAAGTTC TGAGAAGAGA GGAATCTCTT CCAGTGTATG TCTATCAGTC GTCGTCTTAT TCTTGGGATG CGTAGACGAT CCCTTCAAGC TTGTATAGAA GTTGAAAGTC AACTGCATTA ACGATCTAGG CCTCCGGTAC TCCTTGTATT TCGTGGTATC AAAATTTTAT CTTCCTACCT TCCGCCATAA CGAA |
mRNA UTR + CDS |
| >Mp4g10900.1 CGAGCAGCTC TTCTTCCAAT TTCTTCTCGC TCGATCCAGG GATCGTAGCA AGCAGCAGAG CAGGGTCGAG CAGCAGCAGT GCAGCCGCAG GTCGAGGGCG AGAGCTTCGC GAAGCTTTCT GTAGAGTGAG GAGAAATGGC GGCAATGGCA GGAACCGCAG CCGTGCTCGG AAGGTCCGAG ATCCTGGGAC AGGGCCTCGT CGCCTCGTCC TCCACCTCCG TCAGGACCTC GTCCCCGTTC CAGGTCGTGG CCCTCTTCAA CAAGAAGGGT GCTGCTCCCA AGAAGGCCGC TGGCAAGGTC GCCAAGACCG CACCACCCTC CAACGCCGAG TTGGCCAAGT GGTATGGCCC TGACAGGAGA ATCTACTTGC CCGAGGGTCT TTTGGACAAG TCTGATATCC CCGCGTACTT GACGGGTGAG GTTCCCGGAG ATTACGGATT CGACCCCTTC GGTCTCTCCA AGAAGCCCGC CGACTTCGAC AAGTACCAGG CCTACGAGCT CATCCACGCC CGTTGGGCCA TGCTCGGAGC AGCTGGATTC GTCCTCCCCG AGGCCTTCAA CAAGTACGGT GCCGTCTGCG GGCCCGAGGC TGTGTGGTTC AAGACCGGAG CTCTTCTGCT CGAAGGAAAC ACCCTTCAAT ACTTCGGTGC CAGCATCCCA GTGAACCTAG CTGCCGCTGT CATCGCCGAG GTCATCCTCG TCGGAGGTGC CGAGTACTAC CGATCCACCA ACAAGTCCCC ACTCGGATCT GACCTCGACC GCCTCCACCC CGGTGGCGCA TTCGACCCCT TGGGTCTAGC TAAGGACCCC GACCAGTTCG CCTTGTTGAA GGTGAAGGAG ATCAAGAACG GACGACTGGC CATGTTCTCC ATGCTCGGAT TCTTCATCCA GGCGTACGTG ACCGGCGAGG GCCCCGTCGA GAACTTGGCC GCTCACTTGA GCGATCCGTT CGGAAACAAT TTGCTGACAG TTCTGCAAGG AAGCGCCGAG CGCGTTCCTA GCCTGTAGAC TACAGATCAG ATCAAGTTCT GAGAAGAGAG GAATCTCTTC CAGTGTATGT CTATCAGTCG TCGTCTTATT CTTGGGATGC GTAGACGATC CCTTCAAGCT TGTATAGAAG TTGAAAGTCA ACTGCATTAA CGATCTAGGC CTCCGGTACT CCTTGTATTT CGTGGTATCA AAATTTTATC TTCCTACCTT CCGCCATAAC GAA |
CDS |
| >Mp4g10900.1 ATGGCGGCAA TGGCAGGAAC CGCAGCCGTG CTCGGAAGGT CCGAGATCCT GGGACAGGGC CTCGTCGCCT CGTCCTCCAC CTCCGTCAGG ACCTCGTCCC CGTTCCAGGT CGTGGCCCTC TTCAACAAGA AGGGTGCTGC TCCCAAGAAG GCCGCTGGCA AGGTCGCCAA GACCGCACCA CCCTCCAACG CCGAGTTGGC CAAGTGGTAT GGCCCTGACA GGAGAATCTA CTTGCCCGAG GGTCTTTTGG ACAAGTCTGA TATCCCCGCG TACTTGACGG GTGAGGTTCC CGGAGATTAC GGATTCGACC CCTTCGGTCT CTCCAAGAAG CCCGCCGACT TCGACAAGTA CCAGGCCTAC GAGCTCATCC ACGCCCGTTG GGCCATGCTC GGAGCAGCTG GATTCGTCCT CCCCGAGGCC TTCAACAAGT ACGGTGCCGT CTGCGGGCCC GAGGCTGTGT GGTTCAAGAC CGGAGCTCTT CTGCTCGAAG GAAACACCCT TCAATACTTC GGTGCCAGCA TCCCAGTGAA CCTAGCTGCC GCTGTCATCG CCGAGGTCAT CCTCGTCGGA GGTGCCGAGT ACTACCGATC CACCAACAAG TCCCCACTCG GATCTGACCT CGACCGCCTC CACCCCGGTG GCGCATTCGA CCCCTTGGGT CTAGCTAAGG ACCCCGACCA GTTCGCCTTG TTGAAGGTGA AGGAGATCAA GAACGGACGA CTGGCCATGT TCTCCATGCT CGGATTCTTC ATCCAGGCGT ACGTGACCGG CGAGGGCCCC GTCGAGAACT TGGCCGCTCA CTTGAGCGAT CCGTTCGGAA ACAATTTGCT GACAGTTCTG CAAGGAAGCG CCGAGCGCGT TCCTAGCCTG TAG |
Protein |
| >Mp4g10900.1 MAAMAGTAAV LGRSEILGQG LVASSSTSVR TSSPFQVVAL FNKKGAAPKK AAGKVAKTAP PSNAELAKWY GPDRRIYLPE GLLDKSDIPA YLTGEVPGDY GFDPFGLSKK PADFDKYQAY ELIHARWAML GAAGFVLPEA FNKYGAVCGP EAVWFKTGAL LLEGNTLQYF GASIPVNLAA AVIAEVILVG GAEYYRSTNK SPLGSDLDRL HPGGAFDPLG LAKDPDQFAL LKVKEIKNGR LAMFSMLGFF IQAYVTGEGP VENLAAHLSD PFGNNLLTVL QGSAERVPSL |