Mp4g11380



Description

Annotation

Database ID Description
SMART SM00355 c2h2final6
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF13912 C2H2-type zinc finger
Coils Coil Coil
PANTHER PTHR46869 C2H2-LIKE ZINC FINGER PROTEIN
Gene3D G3DSA:3.30.160.60 Classic Zinc Finger
ProSiteProfiles PS50157 Zinc finger C2H2 type domain profile.
ProSitePatterns PS00028 Zinc finger C2H2 type domain signature.
SUPERFAMILY SSF57667 beta-beta-alpha zinc fingers
KOG KOG2785 C2H2-type Zn-finger protein; C-term missing; [R]
MapolyID Mapoly0011s0122 -

Nomenclature

Gene symbol Product Transcript ID Status
MpC2H2-3 transcription factor, C2H2-ZnF Published
MpDAZ1 C2H2 Zn-finger transcription factor, ortholog of Arabidopsis thaliana DAZ1 and DAZ2 Published

Associated Literature (AI-based literature mining, Beta-version)

Marchantia ortholog of AtDAZ1; a downstream transcription factor whose expression is controlled by MpDUO1, demonstrating conservation of the DUO1-DAZ1 module among land plants.

1 core 2 peripheral

Higo, A., et al. (2018) · Nature Communications  research experimental subject
Marchantia ortholog of AtDAZ1; a downstream transcription factor whose expression is controlled by MpDUO1, demonstrating conservation of the DUO1-DAZ1 module among land plants.
Wang, M., et al. (2024a) · Communications Biology  research sequence background
Listed only in the data availability/accession section (Mp4g11380); no functional analysis.
Furuya, T., et al. (2024) · Nature Plants  research experimental background
MpDAZ1 in late antheridium development

Transcript models

Transcript ID Location Sequences Extract region
Mp4g11380.1 chr4:14365278..14369297 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g11380 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g11380 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.