Mp4g12490



Description

Annotation

Database ID Description
Coils Coil Coil
ProSitePatterns PS00350 MADS-box domain signature.
PANTHER PTHR48019 SERUM RESPONSE FACTOR HOMOLOG
Gene3D G3DSA:3.40.1810.10 -
MobiDBLite mobidb-lite consensus disorder prediction
PRINTS PR00404 MADS domain signature
CDD cd00265 MADS_MEF2_like
SUPERFAMILY SSF55455 SRF-like
ProSiteProfiles PS50066 MADS-box domain profile.
FunFam G3DSA:3.40.1810.10:FF:000028 Agamous-like MADS-box protein AGL66 isoform A
Pfam PF00319 SRF-type transcription factor (DNA-binding and dimerisation domain)
ProSiteProfiles PS51297 K-box domain profile.
SMART SM00432 madsneu2
KEGG K09264 MADS-box transcription factor, plant
KOG KOG0014 MADS box transcription factor; [K]
MapolyID Mapoly0174s0011 -
GO GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO GO:0045944 positive regulation of transcription by RNA polymerase II
GO GO:0005634 nucleus
GO GO:0006357 regulation of transcription by RNA polymerase II
GO GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0046983 protein dimerization activity
GO GO:0003677 DNA binding
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific

Nomenclature

Gene symbol Product Transcript ID Status
MpMADS1 transcription factor, MIKC-type MADS-box protein 1 Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, MIKC-type MADS-box protein 1; Genome paper MADS1: Mapoly0174s0011.1 (from nomenclature)

0 core 1 peripheral

Lin, P. C., et al. (2016) · Plant and Cell Physiology  research experimental comparator
MADS-box gene (LW2328) identified as a target of Mpo-miR11687.1; cleavage supported by degradome evidence.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g12490.1 chr4:15952995..15957543 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g12490 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g12490 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.