Mp4g13360
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:1.10.20.10 | Histone, subunit A |
| PANTHER | PTHR11064 | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| FunFam | G3DSA:1.10.20.10:FF:000035 | Nuclear transcription factor Y subunit B-3 |
| SUPERFAMILY | SSF47113 | Histone-fold |
| ProSitePatterns | PS00685 | NF-YB/HAP3 subunit signature. |
| PRINTS | PR00615 | CCAAT-binding transcription factor subunit A signature |
| Pfam | PF00808 | Histone-like transcription factor (CBF/NF-Y) and archaeal histone |
| KEGG | K08065 | nuclear transcription Y subunit beta |
| KOG | KOG0869 | CCAAT-binding factor, subunit A (HAP3); C-term missing; [K] |
| MapolyID | Mapoly0214s0002 | - |
| GO | GO:0043565 | sequence-specific DNA binding |
| GO | GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding |
| GO | GO:0005634 | nucleus |
| GO | GO:0006357 | regulation of transcription by RNA polymerase II |
| GO | GO:0001228 | DNA-binding transcription activator activity, RNA polymerase II-specific |
| GO | GO:0016602 | CCAAT-binding factor complex |
| GO | GO:0046982 | protein heterodimerization activity |
| GO | GO:0006355 | regulation of DNA-templated transcription |
| GO | GO:0000981 | DNA-binding transcription factor activity, RNA polymerase II-specific |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCCAAT-NFYB1 | transcription factor, CCAAT-NFYB | Published |
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g13360 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g13360.1 GCTGCTTTAT CCTGAAAGAA GCTCGAGGGA AGCTGCAGTT CGTGTGCGTC TGATCATCTG CGATTGACGA GGGAGGGCGA GGCTTGATGA GCCGGGCGCG CGCTAATATA TTAAAAATTT TACGGTGCGC GCGAGAGAGG CCGGAGCCGA GCTTAGAGAT CCATCCTGGA GGATTGGTGG GGGGAGTGTG GAGAGTGCTA TTTTAAATGC TTTAATTTGG ATTTTTTTGG GGAAACAGGG TTTGCGAGGA AAAGTCTCTC GCTCTGAGAG CGAGCGGAGG GAGTGTGCTT GTTTGTCATC TGCAGAAGAG AAGCGGGATC CTATCAGAGG CTGTACCCTG GCCGCAGGTT GGTCCACAGT GAGAGGTTTT TAAGCTGTCT TGCAGATCAA GTCCCATTTG CGTGGCATTT TTAACGAGTG CGCGTTGTGT GTTTGTCCAG GCGGGATCGT CTGTGTCTGT GTGTGCGTCT GTCTGTTTGT TTTCTGCAAA AGTGCAAGTC GATTTCGCGT CGGTCGGTTC GGAGAGAGGG GGGATTGGCT GCTTTCGAGT CCTGAAGATC TGCAGGGGCC GTCGCGCGGG TCTTTACGGT CGAGAGAGGG GTCTTGCGTA TGGAGCTTGG GGCGTGAGAG AAGCTGCTGG TGGTAGAGCG AGAGGGCGAG ATAGCGAGAA GAGCGAGAAG AGCGAGTGGG GTACGTGAAT CTGGCAGGTG TTTAGGATAA TTCAATCGCT GTAGCTTGCT AGGAAGCACT CATCACCGCC GCTGCCCCGG GCGATACTGG TTGCAGGTTC GAAGTAGATG GATACTTATA AGTGACAAGG GAGGAGATTA GGAAGGAAGA AGCTCGAGGA GCACTGTTGC GACCAGGAGT AGGGGATTTG TCGACAAGAT AACTCGGAGG TTCTTTACGG CCCGACGCTT CTGGCATTCT TGGGGCCTCG ACTGGCAGAC TGGGGCGGCT TCTAGCTGCT CAGAAAGCGC TTGTTCTTCT CTTGATTTTG ACTGATTGGA GATGGGCAAG CACATTCTGT GACACGTGAA CTCACAGCCC CGTGAGTTTG CAGGAACCTG CCCATAGGTG TGCTTCTAGG GTTGACGAAG AAACTTGCCC GAACGATTTG AGCGATGGCT GATTACCATC AGCAGCAGCC CGGTAGCCCG GAGAGCAGCC CTCACTCTGA CAAGGAGTCC GGGGGTGGTC ACTTCGGGAG CGGTCAAGAT GCTTCAATTA AGGAGCAAGA CAGGTTTCTC CCCATCGCAA ATGTAAGTCG GATCATGAAG AAAGCGCTTC CGGCGAATGC GAAAATCTCG AAGGATGCCA AAGAAACGGT TCAAGAATGC GTGTCTGAGT TCATCAGTTT CATCACTGGA GAGGCCTCTG ACAAGTGCCA GAGGGAGAAA CGGAAGACAA TCAATGGCGA CGATCTTCTG TGGGCAATGA GCACGCTGGG TTTCGAAGAC TACGTCGAAC CGTTGAAGGT GTACCTGCAC AAGTACCGCG AGACGGAAGG AGAGAAGGCC TCCATGGCCA AACAGGGTGA TCAGTCGGTA GTGAAGGACG GGAGCAGCGG GATGAACGGC AACGTGAATG GCATGAACGG TGGGATGAAC GGAACGATGC AAGGTTCGAT GCAGATGATG CAATCCTACC AGCCCCAGCC TGGAATGATG TACAGTCATC AACAGATGAT GGGGAATCCA TACCAGATGT CCATGCAGAG CCAAGGAGGT CAGTCACGAG GCATGTGAAA CCCAGATCCA AGGAATGAAG CTGTGCATAG ACGTTAGGTG CTGGATTGAT ACGAAAAGCT AGATGAAGGA AGGGGGAGGA AAGGAAGGTA GGCAATCAGA ACTGCATGTA CATTCTGGAG GTGCACGAAC TGCAATTGAA AGTGCTCTTC GCAGAGATTA TGTGCAGTTT TGTCTTTCCG CCCTGTGCTG CAGCCGTTAA AGCTAGGAAG GAAGGAAGCA GATGTTTAGA TGGAGACTAG TCCTCGCAGG ATTGAGGGAA AACCGTTAAC CCGTTTGGAA CAGACGGGTT GAATGACTGT ATAAAAGGTT GAAATTTTGG AGTGATTTTC TTGACTCTGG AAATCTCTTT GAAGCACTAT AGCCGTAGTG TGGGCAGCAC CTTACATCCT CTTAGAAGGT TCTTTTAGAC AGTATTTGGT ACAGTTTTAG AAGATTTTTT TGGAAAGGAC TATCCACTGT CAAGACCATG AGCTCTTTTG GTACAGCGCG CGAAGAAGAT CTGCTTTGTT TTGGTAACGG TTCGGATGCA GGGCGGCAGG TTCCGAGTGG ATTCAGGAAG TGTAGATTGG GGGGCCTTGG TAGAGCACTT TGCATCCAGG ACCTTTCTCT TTTTTCTTGG ATGGGATCTC TGGATTGAAC GGTAGCTCAA TCGGCAAGGT TGTGGCTGTA ATTAGCCTGA TATCTTCGAA CGATTCTTGT TTCTTGTAAG AAGAATTTCT TCTTTGTAAG TCTTTTTGTT ATTGAAGCCC CTTGTCTCTT GGAAAT |
mRNA UTR + CDS |
| >Mp4g13360.1 GCTGCTTTAT CCTGAAAGAA GCTCGAGGGA AGCTGCAGTT CGTGTGCGTC TGATCATCTG CGATTGACGA GGGAGGGCGA GGCTTGATGA GCCGGGCGCG CGCTAATATA TTAAAAATTT TACGGTGCGC GCGAGAGAGG CCGGAGCCGA GCTTAGAGAT CCATCCTGGA GGATTGGTGG GGGGAGTGTG GAGAGTGCTA TTTTAAATGC TTTAATTTGG ATTTTTTTGG GGAAACAGGG TTTGCGAGGA AAAGTCTCTC GCTCTGAGAG CGAGCGGAGG GAGTGTGCTT GTTTGTCATC TGCAGAAGAG AAGCGGGATC CTATCAGAGG CTGTACCCTG GCCGCAGGCG GGATCGTCTG TGTCTGTGTG TGCGTCTGTC TGTTTGTTTT CTGCAAAAGT GCAAGTCGAT TTCGCGTCGG TCGGTTCGGA GAGAGGGGGG ATTGGCTGCT TTCGAGTCCT GAAGATCTGC AGGGGCCGTC GCGCGGGTCT TTACGGTCGA GAGAGGGGTC TTGCGTATGG AGCTTGGGGC GTGAGAGAAG CTGCTGGTGG TAGAGCGAGA GGGCGAGATA GCGAGAAGAG CGAGAAGAGC GAGTGGGGTA CGTGAATCTG GCAGGTGTTT AGGATAATTC AATCGCTGTA GCTTGCTAGG AAGCACTCAT CACCGCCGCT GCCCCGGGCG ATACTGGTTG CAGGTTCGAA GTAGATGGAT ACTTATAAGT GACAAGGGAG GAGATTAGGA AGGAAGAAGC TCGAGGAGCA CTGTTGCGAC CAGGAGTAGG GGATTTGTCG ACAAGATAAC TCGGAGGTTC TTTACGGCCC GACGCTTCTG GCATTCTTGG GGCCTCGACT GGCAGACTGG GGCGGCTTCT AGCTGCTCAG AAAGCGCTTG TTCTTCTCTT GATTTTGACT GATTGGAGAT GGGCAAGCAC ATTCTGTGAC ACGTGAACTC ACAGCCCCGT GAGTTTGCAG GAACCTGCCC ATAGGTGTGC TTCTAGGGTT GACGAAGAAA CTTGCCCGAA CGATTTGAGC GATGGCTGAT TACCATCAGC AGCAGCCCGG TAGCCCGGAG AGCAGCCCTC ACTCTGACAA GGAGTCCGGG GGTGGTCACT TCGGGAGCGG TCAAGATGCT TCAATTAAGG AGCAAGACAG GTTTCTCCCC ATCGCAAATG TAAGTCGGAT CATGAAGAAA GCGCTTCCGG CGAATGCGAA AATCTCGAAG GATGCCAAAG AAACGGTTCA AGAATGCGTG TCTGAGTTCA TCAGTTTCAT CACTGGAGAG GCCTCTGACA AGTGCCAGAG GGAGAAACGG AAGACAATCA ATGGCGACGA TCTTCTGTGG GCAATGAGCA CGCTGGGTTT CGAAGACTAC GTCGAACCGT TGAAGGTGTA CCTGCACAAG TACCGCGAGA CGGAAGGAGA GAAGGCCTCC ATGGCCAAAC AGGGTGATCA GTCGGTAGTG AAGGACGGGA GCAGCGGGAT GAACGGCAAC GTGAATGGCA TGAACGGTGG GATGAACGGA ACGATGCAAG GTTCGATGCA GATGATGCAA TCCTACCAGC CCCAGCCTGG AATGATGTAC AGTCATCAAC AGATGATGGG GAATCCATAC CAGATGTCCA TGCAGAGCCA AGGAGGTCAG TCACGAGGCA TGTGAAACCC AGATCCAAGG AATGAAGCTG TGCATAGACG TTAGGTGCTG GATTGATACG AAAAGCTAGA TGAAGGAAGG GGGAGGAAAG GAAGGTAGGC AATCAGAACT GCATGTACAT TCTGGAGGTG CACGAACTGC AATTGAAAGT GCTCTTCGCA GAGATTATGT GCAGTTTTGT CTTTCCGCCC TGTGCTGCAG CCGTTAAAGC TAGGAAGGAA GGAAGCAGAT GTTTAGATGG AGACTAGTCC TCGCAGGATT GAGGGAAAAC CGTTAACCCG TTTGGAACAG ACGGGTTGAA TGACTGTATA AAAGGTTGAA ATTTTGGAGT GATTTTCTTG ACTCTGGAAA TCTCTTTGAA GCACTATAGC CGTAGTGTGG GCAGCACCTT ACATCCTCTT AGAAGGTTCT TTTAGACAGT ATTTGGTACA GTTTTAGAAG ATTTTTTTGG AAAGGACTAT CCACTGTCAA GACCATGAGC TCTTTTGGTA CAGCGCGCGA AGAAGATCTG CTTTGTTTTG GTAACGGTTC GGATGCAGGG CGGCAGGTTC CGAGTGGATT CAGGAAGTGT AGATTGGGGG GCCTTGGTAG AGCACTTTGC ATCCAGGACC TTTCTCTTTT TTCTTGGATG GGATCTCTGG ATTGAACGGT AGCTCAATCG GCAAGGTTGT GGCTGTAATT AGCCTGATAT CTTCGAACGA TTCTTGTTTC TTGTAAGAAG AATTTCTTCT TTGTAAGTCT TTTTGTTATT GAAGCCCCTT GTCTCTTGGA AAT |
CDS |
| >Mp4g13360.1 ATGGCTGATT ACCATCAGCA GCAGCCCGGT AGCCCGGAGA GCAGCCCTCA CTCTGACAAG GAGTCCGGGG GTGGTCACTT CGGGAGCGGT CAAGATGCTT CAATTAAGGA GCAAGACAGG TTTCTCCCCA TCGCAAATGT AAGTCGGATC ATGAAGAAAG CGCTTCCGGC GAATGCGAAA ATCTCGAAGG ATGCCAAAGA AACGGTTCAA GAATGCGTGT CTGAGTTCAT CAGTTTCATC ACTGGAGAGG CCTCTGACAA GTGCCAGAGG GAGAAACGGA AGACAATCAA TGGCGACGAT CTTCTGTGGG CAATGAGCAC GCTGGGTTTC GAAGACTACG TCGAACCGTT GAAGGTGTAC CTGCACAAGT ACCGCGAGAC GGAAGGAGAG AAGGCCTCCA TGGCCAAACA GGGTGATCAG TCGGTAGTGA AGGACGGGAG CAGCGGGATG AACGGCAACG TGAATGGCAT GAACGGTGGG ATGAACGGAA CGATGCAAGG TTCGATGCAG ATGATGCAAT CCTACCAGCC CCAGCCTGGA ATGATGTACA GTCATCAACA GATGATGGGG AATCCATACC AGATGTCCAT GCAGAGCCAA GGAGGTCAGT CACGAGGCAT GTGA |
Protein |
| >Mp4g13360.1 MADYHQQQPG SPESSPHSDK ESGGGHFGSG QDASIKEQDR FLPIANVSRI MKKALPANAK ISKDAKETVQ ECVSEFISFI TGEASDKCQR EKRKTINGDD LLWAMSTLGF EDYVEPLKVY LHKYRETEGE KASMAKQGDQ SVVKDGSSGM NGNVNGMNGG MNGTMQGSMQ MMQSYQPQPG MMYSHQQMMG NPYQMSMQSQ GGQSRGM |