Mp4g15170



Description

Annotation

Database ID Description
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
Pfam PF00249 Myb-like DNA-binding domain
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:1.10.10.60 -
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
Coils Coil Coil
FunFam G3DSA:1.10.10.60:FF:000002 Myb family transcription factor
PANTHER PTHR31003 MYB FAMILY TRANSCRIPTION FACTOR
SUPERFAMILY SSF46689 Homeodomain-like
MapolyID Mapoly0119s0041 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpGARP6 transcription factor, GARP Published

Transcript models

Transcript ID Location Sequences Extract region
Mp4g15170.1 chr4:20652100..20657502 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g15170 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g15170 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.