Mp4g19650



Description

Annotation

Database ID Description
SMART SM00353 finulus
MobiDBLite mobidb-lite consensus disorder prediction
Gene3D G3DSA:4.10.280.10 -
CDD cd11393 bHLH_AtbHLH_like
ProSiteProfiles PS50888 Myc-type, basic helix-loop-helix (bHLH) domain profile.
SUPERFAMILY SSF47459 HLH, helix-loop-helix DNA-binding domain
Pfam PF00010 Helix-loop-helix DNA-binding domain
PANTHER PTHR46772 BHLH DOMAIN-CONTAINING PROTEIN
CDD cd04873 ACT_UUR-ACR-like
KOG KOG3561 Aryl-hydrocarbon receptor nuclear translocator; C-term missing; [K]
MapolyID Mapoly0126s0029 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0009960 endosperm development
GO GO:0046983 protein dimerization activity

Nomenclature

Gene symbol Product Transcript ID Status
MpBHLH38 transcription factor, bHLH Published
MpZOU1 basic helix loop helix transcription factor Published
Orthologue of Arabidopsis Zhoupi gene, also known as Retarded Growth of Embryo (RGE), At1g49770

Associated Literature (AI-based literature mining, Beta-version)

ZHOUPI ortholog (MpbHLH38; Mp4g19650); recruited in the convergent evolution of water-conducting cells, promoting cell-wall reinforcement and programmed cell death. OE analyzed.

1 core 0 peripheral

Lu, Y.-T., et al. (2024) · Current Biology  research experimental subject
ZHOUPI ortholog (MpbHLH38; Mp4g19650); recruited in the convergent evolution of water-conducting cells, promoting cell-wall reinforcement and programmed cell death. OE analyzed.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g19650.1 chr4:26466047..26472403 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g19650 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g19650 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.