Mp4g20600



Description

Annotation

Database ID Description
FunFam G3DSA:1.10.10.60:FF:000007 Two-component response regulator
SUPERFAMILY SSF46689 Homeodomain-like
Gene3D G3DSA:1.10.10.60 -
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF00072 Response regulator receiver domain
PANTHER PTHR43874 TWO-COMPONENT RESPONSE REGULATOR
CDD cd17584 REC_typeB_ARR-like
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
SMART SM00448 REC_2
NCBIfam TIGR01557 myb-like DNA-binding domain, SHAQKYF class
SUPERFAMILY SSF52172 CheY-like
ProSiteProfiles PS50110 Response regulatory domain profile.
Gene3D G3DSA:3.40.50.2300 -
Pfam PF00249 Myb-like DNA-binding domain
KEGG K14491 two-component response regulator ARR-B family
KOG KOG1601 GATA-4/5/6 transcription factors; C-term missing; [K]
MapolyID Mapoly0101s0006 -
GO GO:0009736 cytokinin-activated signaling pathway
GO GO:0000160 phosphorelay signal transduction system
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpRRB cytokinin response regulator, type-B; transcription factor, GARP Published

Associated Literature (AI-based literature mining, Beta-version)

Type-B response regulator central to cytokinin signaling; knockout lines show defective gemma cup formation and increased rhizoids. Indirectly upregulates MpGCAM1 and drives expression of nitrogen-transport and auxin-related genes; active at the apical notch of young thalli.

5 core 3 peripheral

Bao, H., et al. (2024) · Current Biology  research experimental subject
Type-B response regulator; downstream of MpCKI1/MpHPT two-component signaling.
Aki, S. S., et al. (2022) · Scientific Reports  research experimental subject
Type-B response regulator central to cytokinin signaling; knockout lines show defective gemma cup formation and increased rhizoids. Indirectly upregulates MpGCAM1 and drives expression of nitrogen-transport and auxin-related genes; active at the apical notch of young thalli.
Aki, S. S., et al. (2019a) · Plant & Cell Physiology  research experimental subject
Type-B response regulator (Mapoly0101s0006); essential for cytokinin-mediated organ formation; MpRRB-dependent responses.
Aki, S. S., et al. (2019b) · Plant Signaling & Behavior  research experimental subject
Type-B response regulator (single RRB in M. polymorpha); nuclear-localized; cytokinin two-component signaling coordinates development of diverse organs. Mprrb knockout and MpRRB-Citrine analyzed.
Flores-Sandoval, E., et al. (2016) · Plant and Cell Physiology  research experimental subject
Type-B response regulator (cytokinin response); amiR knockdown demonstrates cytokinin-response phenotypes.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g20600.1 chr4:27801701..27805492 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g20600.2 chr4:27801701..27806052 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g20600 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g20600 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.