Mp4g21790



Description

Annotation

Database ID Description
SMART SM00717 sant
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51294 Myb-type HTH DNA-binding domain profile.
CDD cd00167 SANT
ProSiteProfiles PS50090 Myb-like domain profile.
PANTHER PTHR48000 OS09G0431300 PROTEIN
Gene3D G3DSA:1.10.10.60 -
Pfam PF00249 Myb-like DNA-binding domain
Coils Coil Coil
SUPERFAMILY SSF46689 Homeodomain-like
FunFam G3DSA:1.10.10.60:FF:000015 Transcription factor RAX3
KEGG K09422 transcription factor MYB, plant
KOG KOG0048 Transcription factor, Myb superfamily; C-term missing; [K]
MapolyID Mapoly0874s0001 -

Nomenclature

Gene symbol Product Transcript ID Status
MpR2R3-MYB20 transcription factor, MYB Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, MYB (from nomenclature)

0 core 1 peripheral

Suzuki, H., et al. (2023) · Plant Cell  research experimental background
MpR2R3-MYB20, paralog of GEMMA CUP-ASSOCIATED MYB1, upregulated in Mptir1-1ko cells in the mutant phenotype context.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g21790.1 chr4:28979086..28983697 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g21790 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g21790 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.