Mp4g21980
Description
Annotation
| Database | ID | Description |
|---|---|---|
| Gene3D | G3DSA:3.40.47.10 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| PANTHER | PTHR11877 | HYDROXYMETHYLGLUTARYL-COA SYNTHASE |
| SUPERFAMILY | SSF53901 | Thiolase-like |
| Pfam | PF00195 | Chalcone and stilbene synthases, N-terminal domain |
| MapolyID | Mapoly0090s0024 | - |
| GO | GO:0009058 | biosynthetic process |
| GO | GO:0030639 | polyketide biosynthetic process |
| GO | GO:0016746 | acyltransferase activity |
| GO | GO:0016747 | acyltransferase activity, transferring groups other than amino-acyl groups |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpPKS/CHS-like2 | Secondary metabolism enzyme | Provisional |
This is a provisional entry. If you want to update the entry, please contact the administrator.
Associated Literature (AI-based literature mining, Beta-version)
UVB-induced CHS (chalcone synthase) flavonoid-pathway gene (annotation).
0 core 1 peripheral
Clayton, W. A., et al. (2018)
· Plant Journal research experimental background
UVB-induced CHS (chalcone synthase) flavonoid-pathway gene (annotation).
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g21980 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g21980.1 ATGAAGACTA GATCTTGGTG GGTTGACACA GGACTCCGCT CGAGTCCACA GGAATCTAAG AGTCCTACAA ATGGGGACCG GGATAGAGAA ATGAATTATT TCTCCAGCTC ACAAATAGAG AAATGAATTA TTTCTCATAT GCTATCTGAA TATTCTGGAT GATGTATATA TTAACACTCT TTCTTACTTT GCTTGCGAGA CTAGTTGCGC AAAGTTGTTC GCATGCATCG GGTTTACGAA AGAATCAAAT TTCAAAAGCC AACGCAAGTC TATCTGTTTG TCTTCAAAGA AAATAATCCA TTGCAAACAA TTGAAGCAGA TTCTCTACTA TGCATTCACG TGGATAGCAT GAGTCTGCTC ATTCCTTCAC ATACGGTCTC GTACAATTTA TAAAGTAAGG AGGTTCAACA TGTCCAAGTC TCTCGCTTTG GAGAAGGTCC TTCCTCGTAG GTGGACGAGT CTTACTCTAA GATCAGAAGA GAGAGGAAGG AATTTCAGCG CAAAAAAAAA TTCGGGGGAC TGTGGCTGAC CATGACCATT TGGTCAATGT TGTCATGTTT GACAGCACCG GTCTGATGCA GATATTGCGG TCCTCATGCC GTGACTTAGA AGACTCAAAC TCATCCACCT GTCGATGACA TTAGACTTAT AATATAGTGA AGCATTTAGT GTAAGTTTGC AAGGTATATA TACGAACATG ACAGCCGGTT CTCATCCAGG TCTGCGGGGA TTTGTTTGCA TTGTATCCCT GCTGCTTGTT GAGACGACTA ACGAACTCAC AAATCCGGCA TTCCAAGTTT CAATCTGTCG TGAGTGCTGA GTCTGAGGGT TTGACAATTG TGTTCAGTGG CAAAAATGGC CAACAACGGC ACAGCTACCG CTTACCGCCA CCAGAGGGCC GAAGGGCCAG CGACAGTTCT TGCCATTGGC AAAGCTACTC CCCCAGGGAT TATCCTCAAA GCGAATATCC GGACTTCTTC TTCAATATCA CCAACACCAA TGACAAGACT CATCTCAAAG CCAAATTCGC CCGGATATGT AAGCATTGCA GCTGTTCTCC ATCTTCTACC ATCATCATCG TTGCATAGAG TGCTCTAATT GTCTCTGAAA GCTCATTGAC CTTGCAATTC TAGCTCAAAA TTGTGCGCTT TGACTTCTTA AGTTTCATGT GGAGGATGAG AACTTATATC CACGTCTCTT TTTGTTCAGG CAATAATTCA AGAATCAACA CGAGGTACTT CCATTGCACC GAAGACGTTA TGAAGGCCAA TCCCTCAATG TGCACGTACC TGGAACCTTC ATTCGATGTT CGAGTGAAGG TTCCAGGGTG CAAATGCAAG AATTCACAGG GTGTGAGAGA ATTCACAGGA TGGACCACCG AATTCCAGGG TGCAAGTGCA AGTATTTATT TGCACTTGCA TGAAGGATTT GTTTGA |
mRNA UTR + CDS |
| >Mp4g21980.1 ATGAAGACTA GATCTTGTGG CAAAAATGGC CAACAACGGC ACAGCTACCG CTTACCGCCA CCAGAGGGCC GAAGGGCCAG CGACAGTTCT TGCCATTGGC AAAGCTACTC CCCCAGGGAT TATCCTCAAA GCGAATATCC GGACTTCTTC TTCAATATCA CCAACACCAA TGACAAGACT CATCTCAAAG CCAAATTCGC CCGGATATGC AATAATTCAA GAATCAACAC GAGGTACTTC CATTGCACCG AAGACGTTAT GAAGGCCAAT CCCTCAATGT GCACGTACCT GGAACCTTCA TTCGATGTTC GAGTGAAGGT TCCAGGGTGC AAATGCAAGA ATTCACAGGG TGTGAGAGAA TTCACAGGAT GGACCACCGA ATTCCAGGGT GCAAGTGCAA GTATTTATTT GCACTTGCAT GAAGGATTTG TTTGA |
CDS |
| >Mp4g21980.1 ATGAAGACTA GATCTTGTGG CAAAAATGGC CAACAACGGC ACAGCTACCG CTTACCGCCA CCAGAGGGCC GAAGGGCCAG CGACAGTTCT TGCCATTGGC AAAGCTACTC CCCCAGGGAT TATCCTCAAA GCGAATATCC GGACTTCTTC TTCAATATCA CCAACACCAA TGACAAGACT CATCTCAAAG CCAAATTCGC CCGGATATGC AATAATTCAA GAATCAACAC GAGGTACTTC CATTGCACCG AAGACGTTAT GAAGGCCAAT CCCTCAATGT GCACGTACCT GGAACCTTCA TTCGATGTTC GAGTGAAGGT TCCAGGGTGC AAATGCAAGA ATTCACAGGG TGTGAGAGAA TTCACAGGAT GGACCACCGA ATTCCAGGGT GCAAGTGCAA GTATTTATTT GCACTTGCAT GAAGGATTTG TTTGA |
Protein |
| >Mp4g21980.1 MKTRSCGKNG QQRHSYRLPP PEGRRASDSS CHWQSYSPRD YPQSEYPDFF FNITNTNDKT HLKAKFARIC NNSRINTRYF HCTEDVMKAN PSMCTYLEPS FDVRVKVPGC KCKNSQGVRE FTGWTTEFQG ASASIYLHLH EGFV |