Mp4g22280
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR31241 | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C |
| SUPERFAMILY | SSF54171 | DNA-binding domain |
| Gene3D | G3DSA:3.30.730.10 | AP2/ERF domain |
| PRINTS | PR00367 | Ethylene responsive element binding protein signature |
| ProSiteProfiles | PS51032 | AP2/ERF domain profile. |
| Pfam | PF00847 | AP2 domain |
| CDD | cd00018 | AP2 |
| SMART | SM00380 | rav1_2 |
| KEGG | K09286 | EREBP-like factor |
| MapolyID | Mapoly0090s0002 | - |
| GO | GO:0006355 | regulation of DNA-templated transcription |
| GO | GO:0003700 | DNA-binding transcription factor activity |
| GO | GO:0003677 | DNA binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpERF17 | transcription factor, AP2/ERF | Published |
Associated Literature (AI-based literature mining, Beta-version)
transcription factor, AP2/ERF (from nomenclature)
0 core 1 peripheral
Jibran, R., et al. (2024b)
· Frontiers in Plant Science research experimental background
ERF TF (Mp4g22280); up DEG.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp4g22280 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp4g22280.1 AGTTTGCGAG ATTTGCGAGA CGGAGTGGAA TCCGATGCAG ACGAAAACGG AGCAGCTGGG CTTGCAGCTG AGCTCTTATC CGTAGTTGCT TTACTAATGT CACTCAAGTC AGCATTTTCA CTTCAGATAT CTCCAGTTGC ACCTAGCATC ACGCCCGAGA ACCGAAACGC TTTCAACATC GAGCTGGATT CCTGCTCATA GTATTGATTA CCTGGTCTAT CAAGTTCTTG GCGGCCTTCG CATTGACGGC TACCGTGGCG TTCAGCTCAT TCCAGGTGGT GTTCGGGAGG TTGACGAGAA GGCCTTGGGC AGCAACAGGT CGGTAGCTCT GGAGGCTGGA GTTGAAGTCC TTGTACACTT GAGTTGTGAA GTTCGTCACG CGATCCTCGC ACATGGTCAC CTCCTTTCCT TGGATTTTGC TGGGAGTGTA GATTCAATGT GCAGACACGG CGGCCACAGC CAGACCGATG ACGAACAATG TGGCCACCCA TGAAGCGAAC TGCTTCAAGA ATTGGGTCCA GTTGACTCCC CCACTCCGAT TAATGGCTCC GGTTATGCAC TGGCTGGACG ATGTGGGCAA ACCGTACTGA GAAGCGATCA TGATTACGAA GGCTGTGGCA AGCTCGGCAG CGAATCCCCT GGTGGGTGTC AGCTTCGCGA GCTTCACTCC CATGGGTCTG GTGACATTGC ATCCGTAAGT GGCCAGACCG ATGACAAGAC CGATGGCTCA TCAGACCGAG GCTGGACATT CTTCAAGAGC TGACATTTCT TGTACATGTC CCAGATGGTG GCCATGTATC CGAACTCACC GGCCCCGTGA GCGAAGATGA CACAAATGGC CGAGAAGACC TGCAAGTAGC TGAAAACGTA CTCCACACGA GTCTCTATGA GCTCGCGGAT TCGTGAATCT TGTCGTCAGT CTTGACGATT TTGTGGATAT CCACGTCCAT GCTGTGAGTC GCTGCCTTGC TAAACATCTG CCATCTTGTA AATAGAGCGG GCTCGGCATC GACGGGAGAC ACTTGGTTGG AGCCGGCTGG GATCTCCTCG GGAGTTCTCA TCTCGGAGGC GGTTTGTGGA GAGAAGGCTG TGGGCATTCC CTGGATAGGA TTGCCCTCGA TGCAAAGGAG GGCAACATAG ACGACAGACA GAGTCAAAAC GCTGAGCGGA GCATCGATGA AACCCAGCTG AGCCGAAATT TTGAAATTCC CAACGGCGGG ATCATCAACA CCATGCCTCG ACAGACCGAT AAACAGACCG GTGAGCATTT TCTACGAATT CAGTTAGGAC GGAAACTGCG GCATGGGGAA CAGTCCGATT TTAAACTGGG GGCTTGCAGC TCCCTGACTC CAGGAGGTCC CGAGCTGCAC CAGGCAAGCT TGTTGGACAG TTGGCAGCTG ATGGTCCATT GTGGGCTTTT TTGTGCCAAA CCAGGTGCCA ACGATGTGGC TAATGCTTTC GGAACGTCCG TCGGGAGCAA AACCCTCACG CTGAGGCAGG CCGTCATTGT AAGGAGAGCA TGCTGCCCCT CACCATCCAG CTGAGCGATC CGAACTGATG ACAGTCGCGA TTGGCTGGAG TCGCTCTAAG CTACGAGTGC GAGTAACAAA TGCAAGCAGA GCATTCTGTC TCCTAGATTC TATAGAACGT ACACAATACC GCACTCCAGG ATATTATAGA TGAGACTTTT AAGCTGCTGA AACGTGGACT GTCTGATCAG ACCGACTGAC AATTGACTTG CAGATTGCGT CTCTATTCCA GTTTGCCGGA GCCCTTCTTC TAGGAAGAGT GTCGATAAAT ACCATCGCGT CCCGTATAGC GGACATCAAC TCCTTCACCC GTGACCCGAA GGTTTATGCT TATGGCATGG TTTGCACCTT GGGATTTGGT ACAATTTGGC TTCTTATTCC TTCCTACTTG GGACTGAACG TGTCGTCCTG ATGGGGCGAG GCATGTGTCC ACTCCATTTG CGAAGAAATC TGTGGGTGGT CTATCGACTG GGTGAGAGCA AGAGAACTTA TGTACATATG ATTCTCTCCT TGGTAACATT ATTATAGCAT TCGTCTATTT ACTCAGTATT TTAGCAGTTG CGCGATGCTC TCGCGGTTAA CAGTTACTTC CCGACAGAGA TATCGTAGGA GTAACCAGTA ATTGGCTATC ATACTTCGTG CCTATATAAA GTGATTGTTG TATTCTGAGT TCTTGGACTG GTGTACTTCA TGTGACTTCT GTTCTCGATC GTTGATATCT GCAGAATGAC CAAAGGTGAG AAAGTTCTTC CCAAAAAGTG GAGCAGAGAT TCTTCGAGAA GAGGCCAGTG AGGCCCCGAA AACATGTACT CCAAGTACTA CAGGGGAGTG CGTAAGCGGA ATTCGGGAAA ATGGGTAGCA GAGATTTGGG ATCCGAGGGA TCGAAAGAAA ACAAAAAATT TGTTGTTGGG GACTTTCGAC ACTGAGGAGG AAGCTGCAGA AGTTTATGAC ATTAAAGCTT TAGAAATTTT CGGTCCTAAT GCTCACTTAA ATTTGCAGAG ATCTCGTGCA GCCGCTCAAT CCAATCAGGA TACCGTCGTT ATGCCATTTT TCTCCGTACC TCTGCAAACT TCAATCTCAA TAACAGATTC ATATTCTCAA CCTCAAGTTT CTGAAATTTC TGTGAGTTAT CACCTGGGTT CATTTTTTAT CATTTTGGTT ACAGATTGTG TGTTTGTGTT TAAATTTATT TGTAGACCGA GCGGTCTCAT GATTCTATTC CTACTACTCT TGTGTCATCC GGGTGCGTAT TCTTGTATGT TTTGTTGATT GTCTAGGAAA TGATTTGTTA TTGTGTTATA GCAGGAGCTG TTGAAAACTG AAGCATTGTA CAGAGATTCG AACTCGAATA AAACTCTAGA TTCTTTCATA CCTTTAGAAG TCAAAGGCGT GAATAAAATC GAGGAACTTC TAGAGGTGGA AGTTCCTCGA GTTACTAGGC TAGACACCTA CTTCGAAAAC TTGGACAAAG AACCAGATTC TGAAGCATTG TACAGAGATT CGAACTCGAA TAAAACTCTA GATTCATTCA TACCTTTAGA AGTCAAAGGC GTGAATAAAA GCGAGGAACT TCCACCTCTA GAAGTGGAAT TTACTTGGCT AGACACCTTC TTCGAAAATT TGGACAAAGA ACCAGATTCT GAAGCATTGT ACAGAGATTC GAACTCGAAT AAAACTCTAG ATTCATTCAT ACCTTTAGAA GTCAAAGGCG TGAATAAAAG CGAGGAACTT CTACCTCTAG AAGTGGAAGC TACTTGGCTA GACACCTACT TCGAAAATTT GGACAAAGAA CCAGATTCTG AAGCATTGTA CAGAGATTCG AACTCGAATA AAACTCTAGA TTCTTTCATA CCTTTAGAAG TCAAAGGCGT GAATAAAAGC GAGGAACTTC CACCTTTAGA GGTGGAAGTT ACTCCGCTAG ACACCTACTT CGAAAATTTG GCCAAAGAAC CAGATTTTGA CTTCGCATCG TATTTGGACG AAATCGAATT CAAATACGAT GGACTTCGAT GAGGTGAGTT ATATTAATTT TATTATTTGT TTGATACACT AGGAGTTAAA GTTGTATGCA TTGCTACTCC TCAAAAGACA ACAGAGTAGC ACTACATAAC TCAACCACAT GCTTTTTCTG AATGTGATTT GTCAGGTCTG GCGGAGACTA TCGTCTCAGA AGCTGAGCCT CTTTGGTCGG GCATATTTAT CGAACCAG |
mRNA UTR + CDS |
| >Mp4g22280.1 AGTTTGCGAG ATTTGCGAGA CGGAGTGGAA TCCGATGCAG ACGAAAACGG AGCAGCTGGG CTTGCAGCTG AGCTCTTATC CGTAGTTGCT TTACTAATGT CACTCAAGTC AGCATTTTCA CTTCAGATAT CTCCAGTTGC ACCTAGCATC ACGCCCGAGA ACCGAAACGC TTTCAACATC GAGCTGGATT CCTGCTCATA GTATTGATTA CCTGGTCTAT CAAGTTCTTG GCGGCCTTCG CATTGACGGC TACCGTGGCG TTCAGCTCAT TCCAGGTGGT GTTCGGGAGG TTGACGAGAA GGCCTTGGGC AGCAACAGGT CGGTAGCTCT GGAGGCTGGA GTTGAAGTCC TTGTACACTT GAGTTGTGAA GTTCGTCACG CGATCCTCGC ACATGGTCAC CTCCTTTCCT TGGATTTTGC TGGGAGTGTA GATTCAATGT GCAGACACGG CGGCCACAGC CAGACCGATG ACGAACAATG TGGCCACCCA TGAAGCGAAC TGCTTCAAGA ATTGGGTCCA GTTGACTCCC CCACTCCGAT TAATGGCTCC GGTTATGCAC TGGCTGGACG ATGTGGGCAA ACCGTACTGA GAAGCGATCA TGATTACGAA GGCTGTGGCA AGCTCGGCAG CGAATCCCCT GGTGGGTGTC AGCTTCGCGA GCTTCACTCC CATGGGTCTG GTGACATTGC ATCCGTAAGT GGCCAGACCG ATGACAAGAC CGATGGCTCA TCAGACCGAG GCTGGACATT CTTCAAGAGC TGACATTTCT TGTACATGTC CCAGATGGTG GCCATGTATC CGAACTCACC GGCCCCGTGA GCGAAGATGA CACAAATGGC CGAGAAGACC TGCAAGTAGC TGAAAACGTA CTCCACACGA GTCTCTATGA GCTCGCGGAT TCGTGAATCT TGTCGTCAGT CTTGACGATT TTGTGGATAT CCACGTCCAT GCTGTGAGTC GCTGCCTTGC TAAACATCTG CCATCTTGTA AATAGAGCGG GCTCGGCATC GACGGGAGAC ACTTGGTTGG AGCCGGCTGG GATCTCCTCG GGAGTTCTCA TCTCGGAGGC GGTTTGTGGA GAGAAGGCTG TGGGCATTCC CTGGATAGGA TTGCCCTCGA TGCAAAGGAG GGCAACATAG ACGACAGACA GAGTCAAAAC GCTGAGCGGA GCATCGATGA AACCCAGCTG AGCCGAAATT TTGAAATTCC CAACGGCGGG ATCATCAACA CCATGCCTCG ACAGACCGAT AAACAGACCG GTGCCAACGA TGTGGCTAAT GCTTTCGGAA CGTCCGTCGG GAGCAAAACC CTCACGCTGA GGCAGGCCGT CATTATTGCG TCTCTATTCC AGTTTGCCGG AGCCCTTCTT CTAGGAAGAG TGTCGATAAA TACCATCGCG TCCCGTATAG CGGACATCAA CTCCTTCACC CGTGACCCGA AGGTTTATGC TTATGGCATG GTTTGCACCT TGGGATTTGG TACAATTTGG CTTCTTATTC CTTCCTACTT GGGACTGAAC GTGTCGTCCT GATGGGGCGA GGCATGTGTC CACTCCATTT GCGAAGAAAT CTGTGGGTGG TCTATCGACT GGAATGACCA AAGGTGAGAA AGTTCTTCCC AAAAAGTGGA GCAGAGATTC TTCGAGAAGA GGCCAGTGAG GCCCCGAAAA CATGTACTCC AAGTACTACA GGGGAGTGCG TAAGCGGAAT TCGGGAAAAT GGGTAGCAGA GATTTGGGAT CCGAGGGATC GAAAGAAAAC AAAAAATTTG TTGTTGGGGA CTTTCGACAC TGAGGAGGAA GCTGCAGAAG TTTATGACAT TAAAGCTTTA GAAATTTTCG GTCCTAATGC TCACTTAAAT TTGCAGAGAT CTCGTGCAGC CGCTCAATCC AATCAGGATA CCGTCGTTAT GCCATTTTTC TCCGTACCTC TGCAAACTTC AATCTCAATA ACAGATTCAT ATTCTCAACC TCAAGTTTCT GAAATTTCTG AGCTGTTGAA AACTGAAGCA TTGTACAGAG ATTCGAACTC GAATAAAACT CTAGATTCTT TCATACCTTT AGAAGTCAAA GGCGTGAATA AAATCGAGGA ACTTCTAGAG GTGGAAGTTC CTCGAGTTAC TAGGCTAGAC ACCTACTTCG AAAACTTGGA CAAAGAACCA GATTCTGAAG CATTGTACAG AGATTCGAAC TCGAATAAAA CTCTAGATTC ATTCATACCT TTAGAAGTCA AAGGCGTGAA TAAAAGCGAG GAACTTCCAC CTCTAGAAGT GGAATTTACT TGGCTAGACA CCTTCTTCGA AAATTTGGAC AAAGAACCAG ATTCTGAAGC ATTGTACAGA GATTCGAACT CGAATAAAAC TCTAGATTCA TTCATACCTT TAGAAGTCAA AGGCGTGAAT AAAAGCGAGG AACTTCTACC TCTAGAAGTG GAAGCTACTT GGCTAGACAC CTACTTCGAA AATTTGGACA AAGAACCAGA TTCTGAAGCA TTGTACAGAG ATTCGAACTC GAATAAAACT CTAGATTCTT TCATACCTTT AGAAGTCAAA GGCGTGAATA AAAGCGAGGA ACTTCCACCT TTAGAGGTGG AAGTTACTCC GCTAGACACC TACTTCGAAA ATTTGGCCAA AGAACCAGAT TTTGACTTCG CATCGTATTT GGACGAAATC GAATTCAAAT ACGATGGACT TCGATGAGGT CTGGCGGAGA CTATCGTCTC AGAAGCTGAG CCTCTTTGGT CGGGCATATT TATCGAACCA G |
CDS |
| >Mp4g22280.1 ATGTACTCCA AGTACTACAG GGGAGTGCGT AAGCGGAATT CGGGAAAATG GGTAGCAGAG ATTTGGGATC CGAGGGATCG AAAGAAAACA AAAAATTTGT TGTTGGGGAC TTTCGACACT GAGGAGGAAG CTGCAGAAGT TTATGACATT AAAGCTTTAG AAATTTTCGG TCCTAATGCT CACTTAAATT TGCAGAGATC TCGTGCAGCC GCTCAATCCA ATCAGGATAC CGTCGTTATG CCATTTTTCT CCGTACCTCT GCAAACTTCA ATCTCAATAA CAGATTCATA TTCTCAACCT CAAGTTTCTG AAATTTCTGA GCTGTTGAAA ACTGAAGCAT TGTACAGAGA TTCGAACTCG AATAAAACTC TAGATTCTTT CATACCTTTA GAAGTCAAAG GCGTGAATAA AATCGAGGAA CTTCTAGAGG TGGAAGTTCC TCGAGTTACT AGGCTAGACA CCTACTTCGA AAACTTGGAC AAAGAACCAG ATTCTGAAGC ATTGTACAGA GATTCGAACT CGAATAAAAC TCTAGATTCA TTCATACCTT TAGAAGTCAA AGGCGTGAAT AAAAGCGAGG AACTTCCACC TCTAGAAGTG GAATTTACTT GGCTAGACAC CTTCTTCGAA AATTTGGACA AAGAACCAGA TTCTGAAGCA TTGTACAGAG ATTCGAACTC GAATAAAACT CTAGATTCAT TCATACCTTT AGAAGTCAAA GGCGTGAATA AAAGCGAGGA ACTTCTACCT CTAGAAGTGG AAGCTACTTG GCTAGACACC TACTTCGAAA ATTTGGACAA AGAACCAGAT TCTGAAGCAT TGTACAGAGA TTCGAACTCG AATAAAACTC TAGATTCTTT CATACCTTTA GAAGTCAAAG GCGTGAATAA AAGCGAGGAA CTTCCACCTT TAGAGGTGGA AGTTACTCCG CTAGACACCT ACTTCGAAAA TTTGGCCAAA GAACCAGATT TTGACTTCGC ATCGTATTTG GACGAAATCG AATTCAAATA CGATGGACTT CGATGA |
Protein |
| >Mp4g22280.1 MYSKYYRGVR KRNSGKWVAE IWDPRDRKKT KNLLLGTFDT EEEAAEVYDI KALEIFGPNA HLNLQRSRAA AQSNQDTVVM PFFSVPLQTS ISITDSYSQP QVSEISELLK TEALYRDSNS NKTLDSFIPL EVKGVNKIEE LLEVEVPRVT RLDTYFENLD KEPDSEALYR DSNSNKTLDS FIPLEVKGVN KSEELPPLEV EFTWLDTFFE NLDKEPDSEA LYRDSNSNKT LDSFIPLEVK GVNKSEELLP LEVEATWLDT YFENLDKEPD SEALYRDSNS NKTLDSFIPL EVKGVNKSEE LPPLEVEVTP LDTYFENLAK EPDFDFASYL DEIEFKYDGL R |