Mp4g22940



Description

Annotation

Database ID Description
PANTHER PTHR33184 PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED
MapolyID Mapoly0020s0056, Mapoly0020s0057 -
GO GO:0001709 cell fate determination

Nomenclature

Gene symbol Product Transcript ID Status
MpTPD1 peptide Provisional

Associated Literature (AI-based literature mining, Beta-version)

peptide (from nomenclature)

0 core 1 peripheral

Zheng, B., et al. (2019) · Nature Communications  research sequence comparator
Marchantia TPD1 ortholog (Mapoly0020s0056.1) listed among land-plant TPD1 sequences to show conservation across land plants; not functionally studied here.

Transcript models

Transcript ID Location Sequences Extract region
Mp4g22940.1 chr4:30628402..30631756 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g22940.2 chr4:30628402..30632625 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp4g22940.3 chr4:30628402..30630845 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp4g22940 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp4g22940 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.