Mp5g00110



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
SUPERFAMILY SSF53335 S-adenosyl-L-methionine-dependent methyltransferases
Gene3D G3DSA:3.40.50.150 Vaccinia Virus protein VP39
SMART SM00356 c3hfinal6
Pfam PF00642 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Coils Coil Coil
Gene3D G3DSA:2.40.50.1070 -
ProSiteProfiles PS51687 SAM-dependent methyltransferase RNA m(5)U-type domain profile.
Gene3D G3DSA:4.10.1000.10 -
CDD cd00590 RRM_SF
CDD cd02440 AdoMet_MTases
PANTHER PTHR45904 TRNA (URACIL-5-)-METHYLTRANSFERASE
ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1.
SUPERFAMILY SSF90229 CCCH zinc finger
ProSiteProfiles PS50103 Zinc finger C3H1-type profile.
Pfam PF05958 tRNA (Uracil-5-)-methyltransferase
SUPERFAMILY SSF54928 RNA-binding domain, RBD
Gene3D G3DSA:3.30.70.330 -
KEGG K15332 tRNA (uracil-5-)-methyltransferase [EC:2.1.1.-]
KOG KOG2187 tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes; N-term missing; [J]
KOG KOG1677 CCCH-type Zn-finger protein; N-term missing; C-term missing; [R]
MapolyID Mapoly0078s0012 -
GO GO:0008173 RNA methyltransferase activity
GO GO:0003723 RNA binding
GO GO:0046872 metal ion binding
GO GO:0006396 RNA processing
GO GO:0003676 nucleic acid binding

Nomenclature

Gene symbol Product Transcript ID Status
MpC3H19 transcription factor, C3H Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g00110.1 chr5:248886..254881 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g00110 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g00110 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.