Mp5g00540



Description

Annotation

Database ID Description
ProSiteProfiles PS50893 ATP-binding cassette, ABC transporter-type domain profile.
ProSitePatterns PS00211 ABC transporters family signature.
Gene3D G3DSA:3.40.50.300 -
PANTHER PTHR19229 ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA
MobiDBLite mobidb-lite consensus disorder prediction
SMART SM00382 AAA_5
Pfam PF00005 ABC transporter
Pfam PF12698 ABC-2 family transporter protein
FunFam G3DSA:3.40.50.300:FF:000633 ABC transporter A family member 7
CDD cd03263 ABC_subfamily_A
SUPERFAMILY SSF52540 P-loop containing nucleoside triphosphate hydrolases
KEGG K01990 ABC-2 type transport system ATP-binding protein
KOG KOG0059 Lipid exporter ABCA1 and related proteins, ABC superfamily; [IR]
MapolyID Mapoly0078s0053 -
GO GO:0055085 transmembrane transport
GO GO:0042626 ATPase-coupled transmembrane transporter activity
GO GO:0006869 lipid transport
GO GO:0005524 ATP binding
GO GO:0043231 intracellular membrane-bounded organelle
GO GO:0140359 ABC-type transporter activity
GO GO:0016887 ATP hydrolysis activity
GO GO:0005319 lipid transporter activity
GO GO:0016020 membrane

Nomenclature

Gene symbol Product Transcript ID Status
MpABC53 ABC transporter Provisional
This is a provisional entry. If you want to update the entry, please contact the administrator.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g00540.1 chr5:901923..910440 (-) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g00540 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g00540 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.