Mp5g00920
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PRINTS | PR00325 | Germin signature |
| PANTHER | PTHR31238 | GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 |
| Pfam | PF00190 | Cupin |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls |
| SUPERFAMILY | SSF51182 | RmlC-like cupins |
| CDD | cd02241 | cupin_OxOx |
| SMART | SM00835 | Cupin_1_3 |
| MapolyID | Mapoly1685s0001 | - |
| GO | GO:0030145 | manganese ion binding |
| GO | GO:0005618 | cell wall |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpCupin68 | Cupin | Provisional |
This is a provisional entry. If you want to update the entry, please contact the administrator.
Associated Literature (AI-based literature mining, Beta-version)
Cupin (from nomenclature)
0 core 1 peripheral
Jibran, R., et al. (2024b)
· Frontiers in Plant Science research experimental background
Germin-like; DEG.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g00920 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g00920.1 GCCAACATGA TGTTTACCAC ATGAGTTCCA TAGGAGGAAA CAGCCAAAAC CAGTGTATAA CTCTCTCGGG TATATAAAGA GGAGATCAAA ATGACATAAC CGGAACTCAG CGAAGTGACC TACTGACCTC CTCTTATTCG GTCAAAGTAA GTTACTCCCC AATTCTGAAA TTCTGGTTGC TTCTTTGTCG TCACGAACAT CTGCGCGCTT TAGTTGAGCA CGTCCCAAGA CCTGGCTGTT AATTTTTGAT ATGTCAAGGT TGGACTTCGG TTGGGATCTT ATTTTCAGAT CGATCAGCTC TGATATTTGA GTTTGTAATG TAAGTTCAAA GTACTGCTTG GGGAAATTTC TTTTCTAACG AAGTTCACTA CCAAAATGTT GGCTTGCAGA TCTACAGCTC GATTTTCTAG CGAATCATGG CCACCATGAA GCTCGTACTT GTCCTTATGA TGGCATCAGT CGTTGCCGTG TGCGCCCGTG ACCCCGAACT CACAACCGAT TTCGCCGTCC CAGTAGGAAT GAACTCTTCC TTGATCACTG GAGATTTCTT CACGTTCACA GGTCTCAGAA ACTTCTCCGC TGCTCCAAAC ACCTTCGGCT CCAAGAAGGT TACACAGGTC GAATTCCCCG CTCTCACTGG ACTTGGAGTC GGCGTGACCC TCCTCGAGTA CAAGCCCAAC ACTCTGAACC CTCCCCACAC TCACCCCCGT GGATCAGAAC TCATCTTCGT CATGGCCGGA CACTTGGACG TCGGCCTCAT CGACTCTGCC AACAAGCTGT ACGCCGCCCA TCTCCATGAA GGTGACTTGT TCGTGTTCCC TCAGGGTCTT GTCCACTTTC AGATCAACAT GTCCAAGGAG AAGAGTGTTC TGGCCATCTC TGCTTTCGGT AGCTCCAACG CCGGCACCAT CTCGATGCCC AGGAACATCT TTGGTTCTGG TATTGAGGAC GAGGTTCTCC TCCAGGCTTT TAAAATCACC TCCGCCGAGT TGATGAAGTT GAAAGCTCCA TTCATGCCGA CCGTTTAGAT TTACAATGGC AAGAAGTGAT GTCTTGAGGA GGATGAAGTG GGTCATGTTC TCTGAGTACT TTCCTGTACT CTGTCCATAA GCTTGATGCG GATGAAATCG AGGAATTGTT TCATGAAAAG TCTCATCTTT TCATGAGAAG AAGTGCGCTC CCTGTGAGAG AGTTTCAAAT GAATTTTGAC TTCGAGAATA AACTAGTTCT CTGAGAAAGT CTCAATGGTT ATCATTTA |
mRNA UTR + CDS |
| >Mp5g00920.1 GCCAACATGA TGTTTACCAC ATGAGTTCCA TAGGAGGAAA CAGCCAAAAC CAGTGTATAA CTCTCTCGGG TATATAAAGA GGAGATCAAA ATGACATAAC CGGAACTCAG CGAAGTGACC TACTGACCTC CTCTTATTCG GTCAAAATCT ACAGCTCGAT TTTCTAGCGA ATCATGGCCA CCATGAAGCT CGTACTTGTC CTTATGATGG CATCAGTCGT TGCCGTGTGC GCCCGTGACC CCGAACTCAC AACCGATTTC GCCGTCCCAG TAGGAATGAA CTCTTCCTTG ATCACTGGAG ATTTCTTCAC GTTCACAGGT CTCAGAAACT TCTCCGCTGC TCCAAACACC TTCGGCTCCA AGAAGGTTAC ACAGGTCGAA TTCCCCGCTC TCACTGGACT TGGAGTCGGC GTGACCCTCC TCGAGTACAA GCCCAACACT CTGAACCCTC CCCACACTCA CCCCCGTGGA TCAGAACTCA TCTTCGTCAT GGCCGGACAC TTGGACGTCG GCCTCATCGA CTCTGCCAAC AAGCTGTACG CCGCCCATCT CCATGAAGGT GACTTGTTCG TGTTCCCTCA GGGTCTTGTC CACTTTCAGA TCAACATGTC CAAGGAGAAG AGTGTTCTGG CCATCTCTGC TTTCGGTAGC TCCAACGCCG GCACCATCTC GATGCCCAGG AACATCTTTG GTTCTGGTAT TGAGGACGAG GTTCTCCTCC AGGCTTTTAA AATCACCTCC GCCGAGTTGA TGAAGTTGAA AGCTCCATTC ATGCCGACCG TTTAGATTTA CAATGGCAAG AAGTGATGTC TTGAGGAGGA TGAAGTGGGT CATGTTCTCT GAGTACTTTC CTGTACTCTG TCCATAAGCT TGATGCGGAT GAAATCGAGG AATTGTTTCA TGAAAAGTCT CATCTTTTCA TGAGAAGAAG TGCGCTCCCT GTGAGAGAGT TTCAAATGAA TTTTGACTTC GAGAATAAAC TAGTTCTCTG AGAAAGTCTC AATGGTTATC ATTTA |
CDS |
| >Mp5g00920.1 ATGGCCACCA TGAAGCTCGT ACTTGTCCTT ATGATGGCAT CAGTCGTTGC CGTGTGCGCC CGTGACCCCG AACTCACAAC CGATTTCGCC GTCCCAGTAG GAATGAACTC TTCCTTGATC ACTGGAGATT TCTTCACGTT CACAGGTCTC AGAAACTTCT CCGCTGCTCC AAACACCTTC GGCTCCAAGA AGGTTACACA GGTCGAATTC CCCGCTCTCA CTGGACTTGG AGTCGGCGTG ACCCTCCTCG AGTACAAGCC CAACACTCTG AACCCTCCCC ACACTCACCC CCGTGGATCA GAACTCATCT TCGTCATGGC CGGACACTTG GACGTCGGCC TCATCGACTC TGCCAACAAG CTGTACGCCG CCCATCTCCA TGAAGGTGAC TTGTTCGTGT TCCCTCAGGG TCTTGTCCAC TTTCAGATCA ACATGTCCAA GGAGAAGAGT GTTCTGGCCA TCTCTGCTTT CGGTAGCTCC AACGCCGGCA CCATCTCGAT GCCCAGGAAC ATCTTTGGTT CTGGTATTGA GGACGAGGTT CTCCTCCAGG CTTTTAAAAT CACCTCCGCC GAGTTGATGA AGTTGAAAGC TCCATTCATG CCGACCGTTT AG |
Protein |
| >Mp5g00920.1 MATMKLVLVL MMASVVAVCA RDPELTTDFA VPVGMNSSLI TGDFFTFTGL RNFSAAPNTF GSKKVTQVEF PALTGLGVGV TLLEYKPNTL NPPHTHPRGS ELIFVMAGHL DVGLIDSANK LYAAHLHEGD LFVFPQGLVH FQINMSKEKS VLAISAFGSS NAGTISMPRN IFGSGIEDEV LLQAFKITSA ELMKLKAPFM PTV |