Mp5g05460
Description
Annotation
| Database | ID | Description |
|---|---|---|
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. |
| Pfam | PF02469 | Fasciclin domain |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain |
| PANTHER | PTHR32382 | FASCICLIN-LIKE ARABINOGALACTAN PROTEIN |
| SUPERFAMILY | SSF82153 | FAS1 domain |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| SMART | SM00554 | fasc_3 |
| ProSiteProfiles | PS51257 | Prokaryotic membrane lipoprotein lipid attachment site profile. |
| KOG | KOG1437 | Fasciclin and related adhesion glycoproteins; N-term missing; C-term missing; [MW] |
| MapolyID | Mapoly0027s0079 | - |
| GO | GO:0046658 | obsolete anchored component of plasma membrane |
Nomenclature
No gene symbols are registered for this gene.
Associated Literature (AI-based literature mining, Beta-version)
Fasciclin-like; down DEG.
0 core 1 peripheral
Jibran, R., et al. (2024b)
· Frontiers in Plant Science research experimental background
Fasciclin-like; down DEG.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g05460 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g05460.1 GGAGCTTGTG CATGTGCCTT CTGCATATGC TCTAGCTCGT CTCTCACACC ACACCCTTCA CATTCATTTC AGCAGCTCTC TGAACTACTT TCCACTTAGA TTTATCGACC GCGTTTGGAT TACTGCTTCA TTTGTAGGAA CAGAGGTTTC AGGTATCATG GCTTCAGGAA GAACAGCTTT GGTGGCATCC GTGCTACTGA GCTGCATCGT CGTTTCGTCT GCCTTCAACA TCACCACCAT GCTGAATCAG TTTCCCAGCT TTAGCCAGAT GAACCAGCTC TTGTCTTCGT CCGGAGTCGC CAACGACATC AACGCTCGCA AGTCCATCAC TGTCTTGGTT GTTTCCAACG ATGTACTCAA TGCATTCACC GCCAGCAACC CCAACGTCGA CACTGTCAAG ATGGCCGACT TATTGCGTTA CCATGTCCTC CTGCAATTCT TGGGGATGGA CGAGCTCAAA GCACTGCCCA CTTCCAATTA CACCTCCGTC ACCACTCTCT ACCAGACCAC TGGCAGAGCC AACAACAACG ACGGATTCCT CAACATCTAC AACCTGCCAT CCGGCTTTCT CATCGGGCCC TCGGTCGCGG GCTCCAGCTC CAACGCCACG GTCGCAGCCA ACATCACCCA CGAGGCTTTC GAGATTAGCG TCATCCAAAT CAGTAGCATC CTCACCCCGG TCGGATTCAA CAGCGCCACC GGAGATCTGA TCCAGGTTCT CACGAAGTTC AACGTCTACA CCATGTTCAT CAGCCTGCTC AAGGAATCAG CAGTCGACAG CATCTTCGCA GGCAGGCAGA CCGGTGGGGG AATCACCGTG TTCGCCCCCA CGGACTCGGC CTTCAACAGC CTCGCCTCCG GATCCATCCA AGGCCTCAGC GTCTCGGACC TGAAGCTGCT GATGCAGTAC CACGCTCTGA CCTCGTACCA GCCCCTGAGC GTTCTGCAGA ACATGGTGAA CTCGCCCGTG TCCACCATCG CCTCCACCAT CGCCTCCGGC TACCTTCTGA ACGTGAGCTC CGCCGCCAAG ACTGTAACTC TGCACACGGG AGTGAGCGTC GCCACCATCC AGGAGACTCT GTACGACGCC ACGCCCACCA CCATGTTCGG CATCGACCAA GTTCTCTTGC CCTCGGAGCT CTTCAGCAAA GCCGCCCTGG TCCCTTCTCC TGCCGAGGCT CCCGTCCCCG AGGCTGCCCC TGGCCCTAAG GAGGCTAAGG CTCCCGGTGC GGCTCCCGAC GCTGCTCCCG GACCTGAGAA GCCAGCCGGC TCAACTGCCA GTGTGGTTTC TATGAGCGTA GTTCTGTCCG CGGTTGCTCT CATCGCCTCG TCGTGCCTCG CAGCTTTGTG AAATTTTGTA TAGTATTATT TGGTCTTGGT CGTTTTGGAA TAACTTAGAT ACTTCATTAA AACTCACAAT TATAGTTGTA TTTTTTCCTG GCAGAAATTC TTTGTCCCAA TTGAAGGGAT CGATTTGACG ATTCTAGATT AGCGTAGATA ATAGTACTTT AACTTCATAC ATCTGTTTTT TGAAAAAATG CTAGCTCAAT AAATTAAATT GCCTGCTGGA ATGAATATTT ACTGCCA |
mRNA UTR + CDS |
| >Mp5g05460.1 GGAGCTTGTG CATGTGCCTT CTGCATATGC TCTAGCTCGT CTCTCACACC ACACCCTTCA CATTCATTTC AGCAGCTCTC TGAACTACTT TCCACTTAGA TTTATCGACC GCGTTTGGAT TACTGCTTCA TTTGTAGGAA CAGAGGTTTC AGGTATCATG GCTTCAGGAA GAACAGCTTT GGTGGCATCC GTGCTACTGA GCTGCATCGT CGTTTCGTCT GCCTTCAACA TCACCACCAT GCTGAATCAG TTTCCCAGCT TTAGCCAGAT GAACCAGCTC TTGTCTTCGT CCGGAGTCGC CAACGACATC AACGCTCGCA AGTCCATCAC TGTCTTGGTT GTTTCCAACG ATGTACTCAA TGCATTCACC GCCAGCAACC CCAACGTCGA CACTGTCAAG ATGGCCGACT TATTGCGTTA CCATGTCCTC CTGCAATTCT TGGGGATGGA CGAGCTCAAA GCACTGCCCA CTTCCAATTA CACCTCCGTC ACCACTCTCT ACCAGACCAC TGGCAGAGCC AACAACAACG ACGGATTCCT CAACATCTAC AACCTGCCAT CCGGCTTTCT CATCGGGCCC TCGGTCGCGG GCTCCAGCTC CAACGCCACG GTCGCAGCCA ACATCACCCA CGAGGCTTTC GAGATTAGCG TCATCCAAAT CAGTAGCATC CTCACCCCGG TCGGATTCAA CAGCGCCACC GGAGATCTGA TCCAGGTTCT CACGAAGTTC AACGTCTACA CCATGTTCAT CAGCCTGCTC AAGGAATCAG CAGTCGACAG CATCTTCGCA GGCAGGCAGA CCGGTGGGGG AATCACCGTG TTCGCCCCCA CGGACTCGGC CTTCAACAGC CTCGCCTCCG GATCCATCCA AGGCCTCAGC GTCTCGGACC TGAAGCTGCT GATGCAGTAC CACGCTCTGA CCTCGTACCA GCCCCTGAGC GTTCTGCAGA ACATGGTGAA CTCGCCCGTG TCCACCATCG CCTCCACCAT CGCCTCCGGC TACCTTCTGA ACGTGAGCTC CGCCGCCAAG ACTGTAACTC TGCACACGGG AGTGAGCGTC GCCACCATCC AGGAGACTCT GTACGACGCC ACGCCCACCA CCATGTTCGG CATCGACCAA GTTCTCTTGC CCTCGGAGCT CTTCAGCAAA GCCGCCCTGG TCCCTTCTCC TGCCGAGGCT CCCGTCCCCG AGGCTGCCCC TGGCCCTAAG GAGGCTAAGG CTCCCGGTGC GGCTCCCGAC GCTGCTCCCG GACCTGAGAA GCCAGCCGGC TCAACTGCCA GTGTGGTTTC TATGAGCGTA GTTCTGTCCG CGGTTGCTCT CATCGCCTCG TCGTGCCTCG CAGCTTTGTG AAATTTTGTA TAGTATTATT TGGTCTTGGT CGTTTTGGAA TAACTTAGAT ACTTCATTAA AACTCACAAT TATAGTTGTA TTTTTTCCTG GCAGAAATTC TTTGTCCCAA TTGAAGGGAT CGATTTGACG ATTCTAGATT AGCGTAGATA ATAGTACTTT AACTTCATAC ATCTGTTTTT TGAAAAAATG CTAGCTCAAT AAATTAAATT GCCTGCTGGA ATGAATATTT ACTGCCA |
CDS |
| >Mp5g05460.1 ATGGCTTCAG GAAGAACAGC TTTGGTGGCA TCCGTGCTAC TGAGCTGCAT CGTCGTTTCG TCTGCCTTCA ACATCACCAC CATGCTGAAT CAGTTTCCCA GCTTTAGCCA GATGAACCAG CTCTTGTCTT CGTCCGGAGT CGCCAACGAC ATCAACGCTC GCAAGTCCAT CACTGTCTTG GTTGTTTCCA ACGATGTACT CAATGCATTC ACCGCCAGCA ACCCCAACGT CGACACTGTC AAGATGGCCG ACTTATTGCG TTACCATGTC CTCCTGCAAT TCTTGGGGAT GGACGAGCTC AAAGCACTGC CCACTTCCAA TTACACCTCC GTCACCACTC TCTACCAGAC CACTGGCAGA GCCAACAACA ACGACGGATT CCTCAACATC TACAACCTGC CATCCGGCTT TCTCATCGGG CCCTCGGTCG CGGGCTCCAG CTCCAACGCC ACGGTCGCAG CCAACATCAC CCACGAGGCT TTCGAGATTA GCGTCATCCA AATCAGTAGC ATCCTCACCC CGGTCGGATT CAACAGCGCC ACCGGAGATC TGATCCAGGT TCTCACGAAG TTCAACGTCT ACACCATGTT CATCAGCCTG CTCAAGGAAT CAGCAGTCGA CAGCATCTTC GCAGGCAGGC AGACCGGTGG GGGAATCACC GTGTTCGCCC CCACGGACTC GGCCTTCAAC AGCCTCGCCT CCGGATCCAT CCAAGGCCTC AGCGTCTCGG ACCTGAAGCT GCTGATGCAG TACCACGCTC TGACCTCGTA CCAGCCCCTG AGCGTTCTGC AGAACATGGT GAACTCGCCC GTGTCCACCA TCGCCTCCAC CATCGCCTCC GGCTACCTTC TGAACGTGAG CTCCGCCGCC AAGACTGTAA CTCTGCACAC GGGAGTGAGC GTCGCCACCA TCCAGGAGAC TCTGTACGAC GCCACGCCCA CCACCATGTT CGGCATCGAC CAAGTTCTCT TGCCCTCGGA GCTCTTCAGC AAAGCCGCCC TGGTCCCTTC TCCTGCCGAG GCTCCCGTCC CCGAGGCTGC CCCTGGCCCT AAGGAGGCTA AGGCTCCCGG TGCGGCTCCC GACGCTGCTC CCGGACCTGA GAAGCCAGCC GGCTCAACTG CCAGTGTGGT TTCTATGAGC GTAGTTCTGT CCGCGGTTGC TCTCATCGCC TCGTCGTGCC TCGCAGCTTT GTGA |
Protein |
| >Mp5g05460.1 MASGRTALVA SVLLSCIVVS SAFNITTMLN QFPSFSQMNQ LLSSSGVAND INARKSITVL VVSNDVLNAF TASNPNVDTV KMADLLRYHV LLQFLGMDEL KALPTSNYTS VTTLYQTTGR ANNNDGFLNI YNLPSGFLIG PSVAGSSSNA TVAANITHEA FEISVIQISS ILTPVGFNSA TGDLIQVLTK FNVYTMFISL LKESAVDSIF AGRQTGGGIT VFAPTDSAFN SLASGSIQGL SVSDLKLLMQ YHALTSYQPL SVLQNMVNSP VSTIASTIAS GYLLNVSSAA KTVTLHTGVS VATIQETLYD ATPTTMFGID QVLLPSELFS KAALVPSPAE APVPEAAPGP KEAKAPGAAP DAAPGPEKPA GSTASVVSMS VVLSAVALIA SSCLAAL |