Mp5g05930
Description
Annotation
| Database | ID | Description |
|---|---|---|
| PANTHER | PTHR10969 | MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED |
| Gene3D | G3DSA:3.10.20.90 | - |
| Pfam | PF02991 | Autophagy protein Atg8 ubiquitin like |
| FunFam | G3DSA:3.10.20.90:FF:000149 | microtubule-associated proteins 1A/1B light chain 3C |
| CDD | cd16128 | Ubl_ATG8 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like |
| KEGG | K08341 | GABA(A) receptor-associated protein |
| KOG | KOG1654 | Microtubule-associated anchor protein involved in autophagy and membrane trafficking; [Z] |
| MapolyID | Mapoly0027s0034 | - |
| GO | GO:0006995 | cellular response to nitrogen starvation |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpATG8b | Autophagy protein | Provisional |
Associated Literature (AI-based literature mining, Beta-version)
Autophagy protein (from nomenclature)
0 core 3 peripheral
Abdrakhmanov A, Ethier E, Anisimova AS, Grujic N, Papareddy RK, Clavel M, Karagöz GE, Hallacli E, Dagdas Y. (2026)
· Developmental cell research experimental comparator
ATG8 isoform screened by Y2H as an autophagy partner of the receptor module.
Norizuki, T., et al. (2019)
· Frontiers in Plant Science research experimental tool
Isoform expressed as mCitrine/mRFP-MpATG8b fusion; colocalizes with MpATG8a in the same autophagosomes/autophagic bodies, used as an interchangeable autophagosome marker.
Zhao, J., et al. (2022)
· Journal of Cell Biology research experimental tool
Autophagy marker isoform used as a tagged reporter colocalizing with mScarlet-MpCFS1 on autophagic structures in Marchantia thallus cells.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g05930 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g05930.1 GGAGGGAGTT GCTGAATTAA GGAAGCCCGC GACGAGAGAG GGAAGGGGAA AGTGGCGGAG CGGTGAAGTG AGATTCCGAA TTGCTTCGAG AGCAAGGAAG CGCCGCAGAA GAAGAGCAGG CAGTCGAGAT GAGATAGAGA AGGGAAGGGA GGAGTGCGAG CGTGGATTGG AGTGCAGAGG GTCAGGAAGA GTGTAGAGCC CGGGGGCGAG GAAGAAGGTG GAAATTTGGT CTTGGGTGTT GGTAGTGGTG TTGGTGGTGG TGGACATAGA TACTCAGAGA CCCAGACTCC GACAGACTCG ATTCCTTCTT CAAGGATTGA CTGATTGATT GAATGAATGA TTGATTCGTT GATCGATTGA TTTGCTTGCG GCCATCGACG TTCATCTCGA CTCACACGCG CGAACTAAAG AAGGTATCGA TTGCGGGTCT CTTGCAGCTT TTTTGTTGGT GTTGATGTCC TTGATGCTCC CCTCTCTCTT TTTCTGCTCT TGGCAAGTCG CTTTCAGAGG TAATTCGCGC AAGGCTTGAT GCCATCGGGA CCGCGAAACG CTCTGTAGGA TTCCAGGGGT AGGGAGAATT GCAATTTGGA TCGGAGTCTA GTTCATTCAT TCGAAAGAGC TGCATTTTTC GTTCCTACTT TTTGAAGACT GTCGAAACGC TGAGGAGGAG TACGCGGGAT GCAGGTTTAG ATCTTGGGGC GGTCGAGAGA TGTCGAAGTT CTGGTAGTAA CGGGGAATTG AGTCGTAATT GTTGAGAGAG AAGTGAGAGG ATTGCGGAAT TCGACCGGAA GCGGCCATTG CAACTTGCTC CAGTGCATCT AGACCAACCC AATCTCTGAG TATCCGCGTC TAATGTGGTG AGAGTGTGGA TTCTCTATGC CCGGGGAACC TGAGCAGATT GCGATCATCG CGTCAGAGCT TTGATTGGCA GCTCGTAGAA ACAGAAGTTT GGTTGGAAGA GAAGCCCGGA TTGGATAAGC CTTCCAAATC ATCTTGGATT TGCACTCTGA AAGCAACCTC CCCGCCACGG GCAAGAAAGT TGGTTCAGAC GAATTACGCC GGGATCATCG CATTCTCGTT TGCCCTCCTT GCGTCCTGAG CCCCGCCGAC TGACACTTGC TTCCATTGCT TTGCAAACGG AGAGCAGATC TCGAGGGGCG AGACCCGCGC GCTCGGATTG GCGACATCGA AGGAAGGAAA GAGGAAAGGC TCGGAGGGGA GAGGAATCCA TCCGTCGTGC AGAATGGGAG AGAGCGAGTT TCAATTCAAG CAGACGACGA ACCTCGAGAG CAGGCAAGCG GAGTCGGCGA GGATACTGGA GAAGTACCCC GACAGAGTGC CGGTCATAGT GAAGAGAGCG GACAAGAGCA GCATCCCCGA CATCGACAAG AAGAAGTTTC TGGTGCCGGT GGATTTGGCC GTGGGGCAGT TCGTGTTCGT CATCCGCAAG AGGATGAAGC TGACGCCGGA GAAGGCGATT TTCGTCTTCG TCAAGGACGT CTTGCCTCCG ACCTCGGCCA TGATGGCCCA AATCTACGAC GAGTACAAAG ACCAGGACGG GTTTCTGTAC ATGACCTACA GCGGAGAGAA CACCTTCGGA TCCTCGCACG ATGACGAGGT CGCCCTCGTT GGCTGAAGCC GTCGTCCTGT ATATAGCTAG TACATACACA TCCGATGACC TCGATCGATG CTTCCCGAGA GCTCGCGGAC CGCCCAAGGA TTCGCTTCTC TTTCTCCGCT CCCTTGTACA TTGTGTGTAT AGATAGCCAT CGATAGATAG ATCGATCACC GTAGGCGCCT TAGGGTTTGG AACACGGAGG CTCAGGTCTC TCCGCTGCGA CACACGACCA TGTGAAGATG AAGATGAAGA AGAAGAAGAA GACGACGACG ACGCCGAGAA AGGCCGAGGA AGGGCGAGTC CTGCGCGTTT GCCGACCGAG AATGGTGCTG CAGCGGATGG GAATTCGTAG TGAATGACAT CACGAGGCGA GACGAGAGGC CGCCTGAACT TCTGTGAATC TTGTGAAAAG CCTTAGAGTA GAAAGACGAG AGGCTAGAGG TGCGAAAGTG AATCTCAGTA ATTAACTTTC CTGCACGAAT CAGGAAATGA AAATGGTCGC CACCCTCCCC CTATCTTTCA CCAGCAGAGC AGATCGACAT CTGCTCATCT TTTCAAATTC CTCTCGGATG AGATGACTGG ATAATAATGG ACAGCCGCTG CTCTGATCTC TCTGCCCAAC TGTGGAAAGA GTGCGAGTAG AGAGAGCTGA GAGGTGCGAA AGAAATGTAC TCGTGAAGAT CTCTGTTTAG AGACGGGATT AAGTTCAATA CTTTCAGGGC ACTTGTGTGC GTCCGCATGT |
mRNA UTR + CDS |
| >Mp5g05930.1 GGAGGGAGTT GCTGAATTAA GGAAGCCCGC GACGAGAGAG GGAAGGGGAA AGTGGCGGAG CGGTGAAGTG AGATTCCGAA TTGCTTCGAG AGCAAGGAAG CGCCGCAGAA GAAGAGCAGG CAGTCGAGAT GAGATAGAGA AGGGAAGGGA GGAGTGCGAG CGTGGATTGG AGTGCAGAGG GTCAGGAAGA GTGTAGAGCC CGGGGGCGAG GAAGAAGGTG GAAATTTGGT CTTGGGTGTT GGTAGTGGTG TTGGTGGTGG TGGACATAGA TACTCAGAGA CCCAGACTCC GACAGACTCG ATTCCTTCTT CAAGGATTGA CTGATTGATT GAATGAATGA TTGATTCGTT GATCGATTGA TTTGCTTGCG GCCATCGACG TTCATCTCGA CTCACACGCG CGAACTAAAG AAGATCTCGA GGGGCGAGAC CCGCGCGCTC GGATTGGCGA CATCGAAGGA AGGAAAGAGG AAAGGCTCGG AGGGGAGAGG AATCCATCCG TCGTGCAGAA TGGGAGAGAG CGAGTTTCAA TTCAAGCAGA CGACGAACCT CGAGAGCAGG CAAGCGGAGT CGGCGAGGAT ACTGGAGAAG TACCCCGACA GAGTGCCGGT CATAGTGAAG AGAGCGGACA AGAGCAGCAT CCCCGACATC GACAAGAAGA AGTTTCTGGT GCCGGTGGAT TTGGCCGTGG GGCAGTTCGT GTTCGTCATC CGCAAGAGGA TGAAGCTGAC GCCGGAGAAG GCGATTTTCG TCTTCGTCAA GGACGTCTTG CCTCCGACCT CGGCCATGAT GGCCCAAATC TACGACGAGT ACAAAGACCA GGACGGGTTT CTGTACATGA CCTACAGCGG AGAGAACACC TTCGGATCCT CGCACGATGA CGAGGTCGCC CTCGTTGGCT GAAGCCGTCG TCCTGTATAT AGCTAGTACA TACACATCCG ATGACCTCGA TCGATGCTTC CCGAGAGCTC GCGGACCGCC CAAGGATTCG CTTCTCTTTC TCCGCTCCCT TGTACATTGT GTGTATAGAT AGCCATCGAT AGATAGATCG ATCACCGTAG GCGCCTTAGG GTTTGGAACA CGGAGGCTCA GGTCTCTCCG CTGCGACACA CGACCATGTG AAGATGAAGA TGAAGAAGAA GAAGAAGACG ACGACGACGC CGAGAAAGGC CGAGGAAGGG CGAGTCCTGC GCGTTTGCCG ACCGAGAATG GTGCTGCAGC GGATGGGAAT TCGTAGTGAA TGACATCACG AGGCGAGACG AGAGGCCGCC TGAACTTCTG TGAATCTTGT GAAAAGCCTT AGAGTAGAAA GACGAGAGGC TAGAGGTGCG AAAGTGAATC TCAGTAATTA ACTTTCCTGC ACGAATCAGG AAATGAAAAT GGTCGCCACC CTCCCCCTAT CTTTCACCAG CAGAGCAGAT CGACATCTGC TCATCTTTTC AAATTCCTCT CGGATGAGAT GACTGGATAA TAATGGACAG CCGCTGCTCT GATCTCTCTG CCCAACTGTG GAAAGAGTGC GAGTAGAGAG AGCTGAGAGG TGCGAAAGAA ATGTACTCGT GAAGATCTCT GTTTAGAGAC GGGATTAAGT TCAATACTTT CAGGGCACTT GTGTGCGTCC GCATGT |
CDS |
| >Mp5g05930.1 ATGGGAGAGA GCGAGTTTCA ATTCAAGCAG ACGACGAACC TCGAGAGCAG GCAAGCGGAG TCGGCGAGGA TACTGGAGAA GTACCCCGAC AGAGTGCCGG TCATAGTGAA GAGAGCGGAC AAGAGCAGCA TCCCCGACAT CGACAAGAAG AAGTTTCTGG TGCCGGTGGA TTTGGCCGTG GGGCAGTTCG TGTTCGTCAT CCGCAAGAGG ATGAAGCTGA CGCCGGAGAA GGCGATTTTC GTCTTCGTCA AGGACGTCTT GCCTCCGACC TCGGCCATGA TGGCCCAAAT CTACGACGAG TACAAAGACC AGGACGGGTT TCTGTACATG ACCTACAGCG GAGAGAACAC CTTCGGATCC TCGCACGATG ACGAGGTCGC CCTCGTTGGC TGA |
Protein |
| >Mp5g05930.1 MGESEFQFKQ TTNLESRQAE SARILEKYPD RVPVIVKRAD KSSIPDIDKK KFLVPVDLAV GQFVFVIRKR MKLTPEKAIF VFVKDVLPPT SAMMAQIYDE YKDQDGFLYM TYSGENTFGS SHDDEVALVG |