Mp5g06810



Description

Annotation

Database ID Description
SUPERFAMILY SSF81301 Nucleotidyltransferase
Gene3D G3DSA:3.30.460.10 Beta Polymerase, domain 2
Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A
Gene3D G3DSA:1.10.3090.10 -
PANTHER PTHR43051 POLYNUCLEOTIDE ADENYLYLTRANSFERASE FAMILY PROTEIN
Pfam PF01743 Poly A polymerase head domain
SUPERFAMILY SSF81891 Poly A polymerase C-terminal region-like
KOG KOG2159 tRNA nucleotidyltransferase/poly(A) polymerase; [J]
MapolyID Mapoly0136s0037 -
GO GO:0016779 nucleotidyltransferase activity
GO GO:0003723 RNA binding
GO GO:0006396 RNA processing

Nomenclature

Gene symbol Product Transcript ID Status
MpAGS1 poly(A) polymerase Published

Associated Literature (AI-based literature mining, Beta-version)

AGS1 ortholog (Mapoly0136s0037); poly(A)-related factor acting with MpAHG2 in mitochondrial mRNA poly(A) regulation.

1 core 0 peripheral

Kanazawa, M., et al. (2019) · Plant & Cell Physiology  research experimental subject
AGS1 ortholog (Mapoly0136s0037); poly(A)-related factor acting with MpAHG2 in mitochondrial mRNA poly(A) regulation.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g06810.1 chr5:8951588..8957981 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)
Mp5g06810.2 chr5:8951588..8957981 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g06810 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g06810 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.