Mp5g08310



Description

Annotation

Database ID Description
CDD cd10017 B3_DNA
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF02362 B3 DNA binding domain
SMART SM01019 B3_2
PANTHER PTHR31140 B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3
Gene3D G3DSA:2.40.330.10 -
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
KEGG K09287 RAV-like factor
MapolyID Mapoly0086s0035 -
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpABI3A B3-domain transcription factor abscisic acid-insensitive 3 Published
MpB3-6 transcription factor, B3 Published

Associated Literature (AI-based literature mining, Beta-version)

Ortholog of Arabidopsis ABI3 (Mapoly0086s0035/Mp5g08310), a key regulator of ABA-triggered gemma dormancy. Its transcript was significantly reduced in Mpark1/2ge and Mpark1/3ge but only slightly in Mpark1ge, placing it downstream of B3-Rafs.

3 core 4 peripheral

Jahan, A., et al. (2022) · Frontiers in Plant Science  research experimental subject
Ortholog of Arabidopsis ABI3 (Mapoly0086s0035/Mp5g08310), a key regulator of ABA-triggered gemma dormancy. Its transcript was significantly reduced in Mpark1/2ge and Mpark1/3ge but only slightly in Mpark1ge, placing it downstream of B3-Rafs.
Eklund, D. M., et al. (2018) · Current Biology  research experimental subject
B3-domain ABA-responsive transcription factor (MpABI3A/B); EF1pro:MpABI3A activates downstream LEA/dormancy genes.
Tanaka, H., et al. (2018) · Plant Biotchnology  research experimental subject
Salinity-upregulated B3-family transcription factor (homolog of Arabidopsis ABI3), identified by RNA-Seq (logFC 1.37, lowest FDR 0.0054, most reliable). qRT-PCR confirmed the RNA-Seq expression pattern.
Tolopka, J. I., et al. (2024) · Plants  research citation background
Transcription factor cited from prior literature as affecting ABA responses in the vegetative thallus and controlling gemma dormancy; used to contextualize ABA pathway conservation, not experimentally tested here.
Khatun, N., et al. (2023a) · Physiologia Plantarum  research experimental comparator
ABA-responsive B3 TF (Mapoly0086s0035); ABA-signaling node.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g08310.1 chr5:11343070..11353462 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g08310 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g08310 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA

MarpolBase / Genome Informatics Lab. NIG.