Mp5g10280



Description

Annotation

Database ID Description
MobiDBLite mobidb-lite consensus disorder prediction
ProSiteProfiles PS51032 AP2/ERF domain profile.
SUPERFAMILY SSF54171 DNA-binding domain
Pfam PF00847 AP2 domain
SMART SM00380 rav1_2
Gene3D G3DSA:3.30.730.10 AP2/ERF domain
PANTHER PTHR31190 DNA-BINDING DOMAIN
MapolyID Mapoly0048s0045 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0009873 ethylene-activated signaling pathway
GO GO:0003677 DNA binding

Nomenclature

Gene symbol Product Transcript ID Status
MpAP2L3 transcription factor, AP2/ERF Published

Associated Literature (AI-based literature mining, Beta-version)

transcription factor, AP2/ERF (from nomenclature)

0 core 1 peripheral

Dong, Y., et al. (2024) · Nature Plants  research experimental comparator
Master TF predicted to affect a distinct target set.

Transcript models

Transcript ID Location Sequences Extract region
Mp5g10280.1 chr5:14028014..14035623 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g10280 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g10280 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.