Mp5g11100



Description

Annotation

Database ID Description
Gene3D G3DSA:3.30.730.10 AP2/ERF domain
ProSiteProfiles PS51032 AP2/ERF domain profile.
PANTHER PTHR31190 DNA-BINDING DOMAIN
SMART SM00380 rav1_2
MobiDBLite mobidb-lite consensus disorder prediction
Pfam PF13891 Potential DNA-binding domain
Pfam PF00847 AP2 domain
SUPERFAMILY SSF54171 DNA-binding domain
Pfam PF02362 B3 DNA binding domain
Pfam PF05641 Agenet domain
CDD cd00018 AP2
ProSiteProfiles PS50863 B3 DNA-binding domain profile.
SUPERFAMILY SSF101936 DNA-binding pseudobarrel domain
CDD cd10017 B3_DNA
PRINTS PR00367 Ethylene responsive element binding protein signature
SMART SM01019 B3_2
Gene3D G3DSA:2.40.330.10 -
KEGG K09286 EREBP-like factor
KOG KOG1144 Translation initiation factor 5B (eIF-5B); C-term missing; [J]
MapolyID Mapoly0093s0032 -
GO GO:0006355 regulation of DNA-templated transcription
GO GO:0003700 DNA-binding transcription factor activity
GO GO:0003677 DNA binding
GO GO:0009873 ethylene-activated signaling pathway

Nomenclature

Gene symbol Product Transcript ID Status
MpAP2B3-2 transcription factor, AP2-B3 Published

Transcript models

Transcript ID Location Sequences Extract region
Mp5g11100.1 chr5:14961431..14975515 (+) Gene /  mRNA /  CDS /  Protein
FASTA / GenBank (with flanking bases)

Expression Level powered by MBEX

Link to the original image in MBEX

Single-cell expression scRNA-seq atlas from Wang et al., 2023

Expression of Mp5g11100 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).

Feature plot of Mp5g11100 on UMAP
Feature plot (Seurat scale expression level).
UMAP cluster annotation
Cell-type annotation of the UMAP clusters.
Violin plot by developmental stage
Violin plot by stage. Expression across developmental time points (D0–D31).
Violin plot by cell cluster
Violin plot by cluster. Expression across cell clusters (1–21).

Gene structure:

Sequences:

Gene UTR + CDS + intron

FASTA

mRNA UTR + CDS

FASTA

CDS

FASTA

Protein

FASTA


MarpolBase / Genome Informatics Lab. NIG.