Mp5g11830
Description
Annotation
| Database | ID | Description |
|---|---|---|
| FunFam | G3DSA:1.10.10.60:FF:000009 | transcription factor MYB1R1 |
| SUPERFAMILY | SSF46689 | Homeodomain-like |
| FunFam | G3DSA:1.10.10.60:FF:000154 | Transcription factor SRM1 |
| Gene3D | G3DSA:1.10.10.60 | - |
| Pfam | PF00249 | Myb-like DNA-binding domain |
| ProSiteProfiles | PS50090 | Myb-like domain profile. |
| MobiDBLite | mobidb-lite | consensus disorder prediction |
| ProSiteProfiles | PS51294 | Myb-type HTH DNA-binding domain profile. |
| NCBIfam | TIGR01557 | myb-like DNA-binding domain, SHAQKYF class |
| PANTHER | PTHR44042 | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED |
| SMART | SM00717 | sant |
| CDD | cd00167 | SANT |
| ProSiteProfiles | PS51293 | SANT domain profile. |
| KOG | KOG0724 | Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains; C-term missing; [O] |
| MapolyID | Mapoly0143s0011 | - |
| GO | GO:0003677 | DNA binding |
Nomenclature
| Gene symbol | Product | Transcript ID | Status |
|---|---|---|---|
| MpRR-MYB5 | transcription factor, MYB | Published |
Associated Literature (AI-based literature mining, Beta-version)
RR-type MYB-related TF (Mp5g11830); together with MpRR-MYB2 controls chloroplast biogenesis; mutants show low chlorophyll and perturbed photosynthesis-gene expression.
1 core 2 peripheral
Frangedakis, E., et al. (2024)
· Cell research experimental subject
RR-type MYB-related TF (Mp5g11830); together with MpRR-MYB2 controls chloroplast biogenesis; mutants show low chlorophyll and perturbed photosynthesis-gene expression.
Kushwaha A, Singh S, Zheng BS, Tripathi DK, Gupta R, Singh VP. (2025)
· Journal of integrative plant biology other citation background
Highlighted in this commentary alongside MpRR-MYB2 as a new regulator of chloroplast biogenesis (cited; no original data).
Frangedakis E, Yelina NE, Eeda SK, Romani F, Fragkidis A, Haseloff J, Hibberd JM. (2026)
· Journal of experimental botany research experimental tool
Targeted to demonstrate multiplexed CRISPR editing with the tRNA-gRNA system; used as a test target.
Single-cell expression scRNA-seq atlas from Wang et al., 2023
Expression of Mp5g11830 across the single-cell RNA-seq atlas. Cluster identities (right) annotate the same UMAP used for the feature plot (left).
Gene structure:
Sequences: |
Gene UTR + CDS + intron |
| >Mp5g11830.1 GCACCGAGAG CTCTCTCTCA CACCTGCTTC CGCCCGAGGC CCGTTTCTCT CCTCTCCTTT CATCTCCTCT CTCTCTCCTC GAGCAGCAGC AGCAGCTGCT GCTGCAGCGC AGAGATCTCC TCTTCAGAGT TCCTGTGCAT CCAACAGCAC CGCCTTTCGC CCCTTTCCAT TCGCTTTCCG CCGCTGCTTC CTTCTCTTCT CGTTCGTACC GACTGCGTCT GCTGCCGCGG GGTTCCGTTC AGCTGCGACT GTCACTTCCA CAGCTCGTTC CACCATCTTC CTGCCCCGCC TCGCGAGCGA GCGAGTATTT TTCTATATTT TTCATCCGGA AGACCGTCCC GTCCGGGCCT TTAAGCTGCG ACATCTTTCA GACCAGCTCG AACGGGTTCC TCAATTCTCG TTCATCTCGG CCGCGGGATT GATCGATTGA TCGATTGACC GAGGGGTGGT GGAGTTGCCG AGTTGGAGTC GAAGAAAGAA GGTTTTTATG GGTGGGAGGT CATTTGATTT TGAGCCCGCC GTTTGCCAAC GAGGCGCCGA GTGAAGCAAT CCCGTCGATT GCCGAGCCTC ATTTCACCGT CCCGCAATCG AATTTCTTCC GATTTTAAAT CGCTGGGTGC TGGGCTTGAG GTGAATCGGA GATCACTGAT GGCAACAACC GTCGCCCAAA CAGCGGGGTC TCCTGGACAG TTACCGATTC CTCCTCCTTG GACGCCAAAA TTGGACAAGT TGTTTGAGAA GGCGTTAGCC ATCTATGACG GAGATTCTCC CGATCGATGG GAGAAGATTG CAGCCAAGCT GCCTGGCGTC GATCCCACCG AGGTGAAGAA GCATTACGAT AGGTTGATAG AAGATCTGAA TTCAATAGAG ACTGGACGTG TGGCCCTGCC AAACTACCAC AAGTCCGTCG GCCTAATGTC GTCTTCGGAC GAGGATTCCC CCACCTCGAG GAAGCCCGTT CACGGAGGAC ACCACGGTCT CGGTGGCTCC AATGCAAATG CCACGAATGC CACCAGTCTG CCTTCGGGGA AGGCTCCTAG CTCCAAAGCC AGTGATCCCG AGCGGCGCAA AGGAATTCCG TGGTCCGAAG AAGAGCACAG GTTTGTCACT CTCCCGCTCG TTCTCCATTC TTTCGAGGCT CAAGGAGAGC CATTTGAACT GTACCTAAGG TTTTATTCAA ACACAATGAG GCACAAGGAT CCTCCTGATT TCGAATCCGC TAACTGTCAG TGTCGAGACC TAAGTGAAAC GAGGTCGGTC CGAGTGAGGT AGAGGACCCG TAGCTGTCTC AGAAAATGAT TCGAGCTAGC CCGTGCCGGA CTGACGATGA TGCATCTGTG GGTATGGTAT GCACAGATTA TTTTTGCTAG GGCTTGCCAA ATTCGGCAAG GGAGACTGGC GAAGCATTTC GAGGAATTTT GTAGTATCGA GGACGCCGAC GCAAGTGGCG AGCCACGCCC AAAAGTACTT CATTCGCCTG AACTCCATCA ACAACAAGGA CAAAAGGCGG TCCAGTATCC ACGACATCAC GAGCGTGAAC GATGGAGACT CGCTTCCTCA GAGCCCAGGG CCCATCACGG GCCTGCCATC GCCGGGAGCT CAATGGCCAA GGTCAGGCCT ACAAGGGGCG AGTATGTATG ATATGGGAGG TATGGGAGGA CCCGACCAAG CGATTGGAGG ACAAATGCTT ATGACTCCGA CGGGCCATCC GCACCATGTA CCTTACGGGC ATGTGCCTGT GATGCAAGGG CCCCCAATGG CCATGCAGCA CATGTCGTAC CCGATGCCCC AGTCTGCGAA CGCTTAAACG TTTTTTGATC TAAGCAGAGC AGAACAGAGG GTATGGAGAG CAGTTGAGTA AAATTTTGAG AGCCTGCCTC CGTAGAAGCG ACCCTATGTG CGGAGGTGAA ACCTTTTTAT CATCACATCT GCGAAGGTCG TCTACGGAGC TCCTGCTGTT CTTCGATCTT CTATGTCAGA TTTATATCAG CACTAGCTGC AACAAGATAG CGTAGGGAGA TTCATGTTCC CGTGTGGTTT CGCACACTGG ACGAGTTCGC ACCAATTCCT TGTAGTATTG GTGGCCTGTT TTTGTGCCCA CACCTTTTTC TTGAGACCGA CGAGGCAACT TCTGATTTTG AAGATTTGCA TCCAGCTCAA GGGTTCTACC ACAGGGGTTG GGTATTCTGG GGACCGCGGG GTCACAAGTA CAGACTTTGT ACAGCTGGAA ATAGTAGCTC TGTACATGAT GATGAACGTA GTATGCATTG ATCACATTCT TTCTCCGTTA GGGAGTTCCA AAAGCTATAA GATCGTAAAA GCAAAAAAAA AAACCACAAG TAAATCTATG ATGTACTCAG GATCATTGCG AATTCAGTGT TTTCGCCGGC CTGGTCGAGG CCGGCCGGCG GAATGTAAAT ATTAATACAA TTGCCATTTG G |
mRNA UTR + CDS |
| >Mp5g11830.1 GCACCGAGAG CTCTCTCTCA CACCTGCTTC CGCCCGAGGC CCGTTTCTCT CCTCTCCTTT CATCTCCTCT CTCTCTCCTC GAGCAGCAGC AGCAGCTGCT GCTGCAGCGC AGAGATCTCC TCTTCAGAGT TCCTGTGCAT CCAACAGCAC CGCCTTTCGC CCCTTTCCAT TCGCTTTCCG CCGCTGCTTC CTTCTCTTCT CGTTCGTACC GACTGCGTCT GCTGCCGCGG GGTTCCGTTC AGCTGCGACT GTCACTTCCA CAGCTCGTTC CACCATCTTC CTGCCCCGCC TCGCGAGCGA GCGAGTATTT TTCTATATTT TTCATCCGGA AGACCGTCCC GTCCGGGCCT TTAAGCTGCG ACATCTTTCA GACCAGCTCG AACGGGTTCC TCAATTCTCG TTCATCTCGG CCGCGGGATT GATCGATTGA TCGATTGACC GAGGGGTGGT GGAGTTGCCG AGTTGGAGTC GAAGAAAGAA GGTTTTTATG GGTGGGAGGT CATTTGATTT TGAGCCCGCC GTTTGCCAAC GAGGCGCCGA GTGAAGCAAT CCCGTCGATT GCCGAGCCTC ATTTCACCGT CCCGCAATCG AATTTCTTCC GATTTTAAAT CGCTGGGTGC TGGGCTTGAG GTGAATCGGA GATCACTGAT GGCAACAACC GTCGCCCAAA CAGCGGGGTC TCCTGGACAG TTACCGATTC CTCCTCCTTG GACGCCAAAA TTGGACAAGT TGTTTGAGAA GGCGTTAGCC ATCTATGACG GAGATTCTCC CGATCGATGG GAGAAGATTG CAGCCAAGCT GCCTGGCGTC GATCCCACCG AGGTGAAGAA GCATTACGAT AGGTTGATAG AAGATCTGAA TTCAATAGAG ACTGGACGTG TGGCCCTGCC AAACTACCAC AAGTCCGTCG GCCTAATGTC GTCTTCGGAC GAGGATTCCC CCACCTCGAG GAAGCCCGTT CACGGAGGAC ACCACGGTCT CGGTGGCTCC AATGCAAATG CCACGAATGC CACCAGTCTG CCTTCGGGGA AGGCTCCTAG CTCCAAAGCC AGTGATCCCG AGCGGCGCAA AGGAATTCCG TGGTCCGAAG AAGAGCACAG ATTATTTTTG CTAGGGCTTG CCAAATTCGG CAAGGGAGAC TGGCGAAGCA TTTCGAGGAA TTTTGTAGTA TCGAGGACGC CGACGCAAGT GGCGAGCCAC GCCCAAAAGT ACTTCATTCG CCTGAACTCC ATCAACAACA AGGACAAAAG GCGGTCCAGT ATCCACGACA TCACGAGCGT GAACGATGGA GACTCGCTTC CTCAGAGCCC AGGGCCCATC ACGGGCCTGC CATCGCCGGG AGCTCAATGG CCAAGGTCAG GCCTACAAGG GGCGAGTATG TATGATATGG GAGGTATGGG AGGACCCGAC CAAGCGATTG GAGGACAAAT GCTTATGACT CCGACGGGCC ATCCGCACCA TGTACCTTAC GGGCATGTGC CTGTGATGCA AGGGCCCCCA ATGGCCATGC AGCACATGTC GTACCCGATG CCCCAGTCTG CGAACGCTTA AACGTTTTTT GATCTAAGCA GAGCAGAACA GAGGGTATGG AGAGCAGTTG AGTAAAATTT TGAGAGCCTG CCTCCGTAGA AGCGACCCTA TGTGCGGAGG TGAAACCTTT TTATCATCAC ATCTGCGAAG GTCGTCTACG GAGCTCCTGC TGTTCTTCGA TCTTCTATGT CAGATTTATA TCAGCACTAG CTGCAACAAG ATAGCGTAGG GAGATTCATG TTCCCGTGTG GTTTCGCACA CTGGACGAGT TCGCACCAAT TCCTTGTAGT ATTGGTGGCC TGTTTTTGTG CCCACACCTT TTTCTTGAGA CCGACGAGGC AACTTCTGAT TTTGAAGATT TGCATCCAGC TCAAGGGTTC TACCACAGGG GTTGGGTATT CTGGGGACCG CGGGGTCACA AGTACAGACT TTGTACAGCT GGAAATAGTA GCTCTGTACA TGATGATGAA CGTAGTATGC ATTGATCACA TTCTTTCTCC GTTAGGGAGT TCCAAAAGCT ATAAGATCGT AAAAGCAAAA AAAAAAACCA CAAGTAAATC TATGATGTAC TCAGGATCAT TGCGAATTCA GTGTTTTCGC CGGCCTGGTC GAGGCCGGCC GGCGGAATGT AAATATTAAT ACAATTGCCA TTTGG |
CDS |
| >Mp5g11830.1 ATGGCAACAA CCGTCGCCCA AACAGCGGGG TCTCCTGGAC AGTTACCGAT TCCTCCTCCT TGGACGCCAA AATTGGACAA GTTGTTTGAG AAGGCGTTAG CCATCTATGA CGGAGATTCT CCCGATCGAT GGGAGAAGAT TGCAGCCAAG CTGCCTGGCG TCGATCCCAC CGAGGTGAAG AAGCATTACG ATAGGTTGAT AGAAGATCTG AATTCAATAG AGACTGGACG TGTGGCCCTG CCAAACTACC ACAAGTCCGT CGGCCTAATG TCGTCTTCGG ACGAGGATTC CCCCACCTCG AGGAAGCCCG TTCACGGAGG ACACCACGGT CTCGGTGGCT CCAATGCAAA TGCCACGAAT GCCACCAGTC TGCCTTCGGG GAAGGCTCCT AGCTCCAAAG CCAGTGATCC CGAGCGGCGC AAAGGAATTC CGTGGTCCGA AGAAGAGCAC AGATTATTTT TGCTAGGGCT TGCCAAATTC GGCAAGGGAG ACTGGCGAAG CATTTCGAGG AATTTTGTAG TATCGAGGAC GCCGACGCAA GTGGCGAGCC ACGCCCAAAA GTACTTCATT CGCCTGAACT CCATCAACAA CAAGGACAAA AGGCGGTCCA GTATCCACGA CATCACGAGC GTGAACGATG GAGACTCGCT TCCTCAGAGC CCAGGGCCCA TCACGGGCCT GCCATCGCCG GGAGCTCAAT GGCCAAGGTC AGGCCTACAA GGGGCGAGTA TGTATGATAT GGGAGGTATG GGAGGACCCG ACCAAGCGAT TGGAGGACAA ATGCTTATGA CTCCGACGGG CCATCCGCAC CATGTACCTT ACGGGCATGT GCCTGTGATG CAAGGGCCCC CAATGGCCAT GCAGCACATG TCGTACCCGA TGCCCCAGTC TGCGAACGCT TAA |
Protein |
| >Mp5g11830.1 MATTVAQTAG SPGQLPIPPP WTPKLDKLFE KALAIYDGDS PDRWEKIAAK LPGVDPTEVK KHYDRLIEDL NSIETGRVAL PNYHKSVGLM SSSDEDSPTS RKPVHGGHHG LGGSNANATN ATSLPSGKAP SSKASDPERR KGIPWSEEEH RLFLLGLAKF GKGDWRSISR NFVVSRTPTQ VASHAQKYFI RLNSINNKDK RRSSIHDITS VNDGDSLPQS PGPITGLPSP GAQWPRSGLQ GASMYDMGGM GGPDQAIGGQ MLMTPTGHPH HVPYGHVPVM QGPPMAMQHM SYPMPQSANA |